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Understanding and overcoming the pitfalls and biases of next-generation sequencing (NGS) methods for use in the routine clinical microbiological diagnostic laboratory

European journal of clinical microbiology & infectious diseases, 2019-06, Vol.38 (6), p.1059-1070

2019

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The internet of things for combatting antimicrobial resistance

BioTechniques, 2020-11, Vol.69 (5), p.330-332

Hays, John P

2020

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Diversity, compositional and functional differences between gut microbiota of children and adults

Scientific reports, 2020-01, Vol.10 (1), p.1040-1040, Article 1040

2020

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WeFaceNano: a user-friendly pipeline for complete ONT sequence assembly and detection of antibiotic resistance in multi-plasmid bacterial isolates

BMC microbiology, 2021-06, Vol.21 (1), p.1-171, Article 171

2021

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Comparison of Illumina versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota

Genes, 2020-09, Vol.11 (9), p.1105

2020

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NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy

Gigascience, 2020-10, Vol.9 (10)

2020

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Genetic Analysis of mcr-1-Carrying Plasmids From Gram-Negative Bacteria in a Dutch Tertiary Care Hospital: Evidence for Intrapatient and Interspecies Transmission Events

Frontiers in microbiology, 2021-09, Vol.12, p.727435-727435

2021

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Plasmid-mediated AmpC: prevalence in community-acquired isolates in Amsterdam, the Netherlands, and risk factors for carriage

PloS one, 2015-01, Vol.10 (1), p.e0113033-e0113033

2015

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Differences in Systemic IgA Reactivity and Circulating Th Subsets in Healthy Volunteers With Specific Microbiota Enterotypes

Frontiers in immunology, 2019-03, Vol.10, p.341-341

2019

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Molecular Aspects of Moraxella catarrhalis Pathogenesis

Microbiology and Molecular Biology Reviews, 2009-09, Vol.73 (3), p.389-406

2009

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Datasets for benchmarking antimicrobial resistance genes in bacterial metagenomic and whole genome sequencing

Scientific data, 2022-06, Vol.9 (1), p.341-6, Article 341

2022

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Genome Analysis of Moraxella catarrhalis Strain RH4, a Human Respiratory Tract Pathogen

Journal of Bacteriology, 2010-07, Vol.192 (14), p.3574-3583

2010

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First Report of Colistin-Resistant Escherichia coli Carrying mcr-1 IncI2(delta) and IncX4 Plasmids from Camels ( Camelus dromedarius ) in the Gulf Region

Antibiotics (Basel), 2024-02, Vol.13 (3), p.227

2024

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In vitro activity of novel apramycin-dextran nanoparticles and free apramycin against selected Dutch and Pakistani Klebsiella pneumonia isolates

Heliyon, 2023-12, Vol.9 (12), p.e22821-e22821, Article e22821

2023

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Detection and occurrence of plasmid-mediated AmpC in highly resistant gram-negative rods

PloS one, 2014-03, Vol.9 (3), p.e91396-e91396

2014

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Detection of Healthcare-Related Extended-Spectrum Beta-Lactamase-Producing Escherichia coli Transmission Events Using Combined Genetic and Phenotypic Epidemiology

PloS one, 2016-07, Vol.11 (7), p.e0160156-e0160156

2016

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Salivary Biomarkers for Dental Caries Detection and Personalized Monitoring

Journal of personalized medicine, 2021-03, Vol.11 (3), p.235

2021

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Highly Specific Protease-Based Approach for Detection of Porphyromonas gingivalis in Diagnosis of Periodontitis

Journal of Clinical Microbiology, 2012-01, Vol.50 (1), p.104-112

2012

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Developmental roadmap for antimicrobial susceptibility testing systems

Nature reviews. Microbiology, 2019-01, Vol.17 (1), p.51-62

2019

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Comprehensive antigen screening identifies Moraxella catarrhalis proteins that induce protection in a mouse pulmonary clearance model

PloS one, 2013-05, Vol.8 (5), p.e64422-e64422

2013

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Expert guidance on target product profile development for AMR diagnostic tests

BMJ global health, 2023-12, Vol.8 (12), p.e012319

2023

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Comparative analysis and supragenome modeling of twelve Moraxella catarrhalis clinical isolates

BMC genomics, 2011-01, Vol.12 (1), p.70-70, Article 70

2011

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Differential virulence gene expression of group A Streptococcus serotype M3 in response to co-culture with Moraxella catarrhalis

PloS one, 2013-04, Vol.8 (4), p.e62549-e62549

2013

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Understanding and overcoming the pitfalls and biases of next-generation sequencing (NGS) methods for use in the routine clinical microbiological diagnostic laboratory

The internet of things for combatting antimicrobial resistance

Diversity, compositional and functional differences between gut microbiota of children and adults

Progress in Alternative Strategies to Combat Antimicrobial Resistance: Focus on Antibiotics

WeFaceNano: a user-friendly pipeline for complete ONT sequence assembly and detection of antibiotic resistance in multi-plasmid bacterial isolates

Comparison of Illumina versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota

NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy

Genetic Analysis of mcr-1-Carrying Plasmids From Gram-Negative Bacteria in a Dutch Tertiary Care Hospital: Evidence for Intrapatient and Interspecies Transmission Events

Plasmid-mediated AmpC: prevalence in community-acquired isolates in Amsterdam, the Netherlands, and risk factors for carriage

Differences in Systemic IgA Reactivity and Circulating Th Subsets in Healthy Volunteers With Specific Microbiota Enterotypes

Molecular Aspects of Moraxella catarrhalis Pathogenesis

Datasets for benchmarking antimicrobial resistance genes in bacterial metagenomic and whole genome sequencing

Genome Analysis of Moraxella catarrhalis Strain RH4, a Human Respiratory Tract Pathogen

First Report of Colistin-Resistant Escherichia coli Carrying mcr-1 IncI2(delta) and IncX4 Plasmids from Camels ( Camelus dromedarius ) in the Gulf Region

In vitro activity of novel apramycin-dextran nanoparticles and free apramycin against selected Dutch and Pakistani Klebsiella pneumonia isolates

Detection and occurrence of plasmid-mediated AmpC in highly resistant gram-negative rods

Detection of Healthcare-Related Extended-Spectrum Beta-Lactamase-Producing Escherichia coli Transmission Events Using Combined Genetic and Phenotypic Epidemiology

OralDisk: A Chair-Side Compatible Molecular Platform Using Whole Saliva for Monitoring Oral Health at the Dental Practice

Salivary Biomarkers for Dental Caries Detection and Personalized Monitoring

Highly Specific Protease-Based Approach for Detection of Porphyromonas gingivalis in Diagnosis of Periodontitis

Developmental roadmap for antimicrobial susceptibility testing systems

Comprehensive antigen screening identifies Moraxella catarrhalis proteins that induce protection in a mouse pulmonary clearance model

Expert guidance on target product profile development for AMR diagnostic tests

Comparative analysis and supragenome modeling of twelve Moraxella catarrhalis clinical isolates

Differential virulence gene expression of group A Streptococcus serotype M3 in response to co-culture with Moraxella catarrhalis

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