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ilastik: interactive machine learning for (bio)image analysis

Nature methods, 2019-12, Vol.16 (12), p.1226

2019

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A comparison of random forest and its Gini importance with standard chemometric methods for the feature selection and classification of spectral data

BMC bioinformatics, 2009-07, Vol.10 (1), p.213-213, Article 213

2009

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Experimental and computational analyses reveal that environmental restrictions shape HIV-1 spread in 3D cultures

Nature communications, 2019-05, Vol.10 (1), p.2144-18, Article 2144

2019

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A digital 3D reference atlas reveals cellular growth patterns shaping the Arabidopsis ovule

eLife, 2021-01, Vol.10

2021

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Seipin forms a flexible cage at lipid droplet formation sites

Nature structural & molecular biology, 2022-03, Vol.29 (3), p.194

2022

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Automated detection and segmentation of synaptic contacts in nearly isotropic serial electron microscopy images

PloS one, 2011-10, Vol.6 (10), p.e24899-e24899

2011

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Graphical model for joint segmentation and tracking of multiple dividing cells

Bioinformatics, 2015-03, Vol.31 (6), p.948-956

2015

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Automated detection of synapses in serial section transmission electron microscopy image stacks

PloS one, 2014-02, Vol.9 (2), p.e87351-e87351

2014

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Correlative in vivo 2 photon and focused ion beam scanning electron microscopy of cortical neurons

PloS one, 2013-02, Vol.8 (2), p.e57405-e57405

2013

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End-to-End Learning of Decision Trees and Forests

International journal of computer vision, 2020-04, Vol.128 (4), p.997-1011

2020

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Three-dimensional immersive virtual reality for studying cellular compartments in 3D models from EM preparations of neural tissues

Journal of comparative neurology (1911), 2016-01, Vol.524 (1), p.23-38

2016

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Integration of Cell Growth and Asymmetric Division during Lateral Root Initiation in Arabidopsis thaliana

Plant and cell physiology, 2021-11, Vol.62 (8), p.1269-1279

2021

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Semiautomated correlative 3D electron microscopy of in vivo-imaged axons and dendrites

Nature protocols, 2014-06, Vol.9 (6), p.1354-1366

2014

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Robust Prediction of the MASCOT Score for an Improved Quality Assessment in Mass Spectrometric Proteomics

Journal of proteome research, 2008-09, Vol.7 (9), p.3708-3717

2008

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Concise Representation of Mass Spectrometry Images by Probabilistic Latent Semantic Analysis

Analytical chemistry (Washington), 2008-12, Vol.80 (24), p.9649-9658

2008

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Computer-aided diagnosis from weak supervision: A benchmarking study

Computerized medical imaging and graphics, 2015-06, Vol.42, p.44-50

2015

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Imagining the future of bioimage analysis

Nature biotechnology, 2016-12, Vol.34 (12), p.1250-1255

2016

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One plus one makes three (for social networks)

PloS one, 2012-04, Vol.7 (4), p.e34740-e34740

2012

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The Mutex Watershed and its Objective: Efficient, Parameter-Free Graph Partitioning

IEEE transactions on pattern analysis and machine intelligence, 2021-10, Vol.43 (10), p.3724-3738

2021

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Automated Processing of Zebrafish Imaging Data: A Survey

Zebrafish, 2013-09, Vol.10 (3), p.41-421

2013

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When less can yield more - Computational preprocessing of MS/MS spectra for peptide identification

Proteomics (Weinheim), 2009-11, Vol.9 (21), p.4978-4984

2009

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NITPICK: peak identification for mass spectrometry data

BMC bioinformatics, 2008-08, Vol.9 (1), p.355-355, Article 355

2008

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Multivariate feature selection and hierarchical classification for infrared spectroscopy: serum-based detection of bovine spongiform encephalopathy

Analytical and bioanalytical chemistry, 2007-03, Vol.387 (5), p.1801-1807

2007

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ilastik: interactive machine learning for (bio)image analysis

An objective comparison of cell-tracking algorithms

Accurate and versatile 3D segmentation of plant tissues at cellular resolution

A comparison of random forest and its Gini importance with standard chemometric methods for the feature selection and classification of spectral data

Experimental and computational analyses reveal that environmental restrictions shape HIV-1 spread in 3D cultures

A digital 3D reference atlas reveals cellular growth patterns shaping the Arabidopsis ovule

Seipin forms a flexible cage at lipid droplet formation sites

Automated detection and segmentation of synaptic contacts in nearly isotropic serial electron microscopy images

Graphical model for joint segmentation and tracking of multiple dividing cells

Automated detection of synapses in serial section transmission electron microscopy image stacks

Correlative in vivo 2 photon and focused ion beam scanning electron microscopy of cortical neurons

End-to-End Learning of Decision Trees and Forests

Three-dimensional immersive virtual reality for studying cellular compartments in 3D models from EM preparations of neural tissues

Integration of Cell Growth and Asymmetric Division during Lateral Root Initiation in Arabidopsis thaliana

Semiautomated correlative 3D electron microscopy of in vivo-imaged axons and dendrites

Robust Prediction of the MASCOT Score for an Improved Quality Assessment in Mass Spectrometric Proteomics

Concise Representation of Mass Spectrometry Images by Probabilistic Latent Semantic Analysis

Computer-aided diagnosis from weak supervision: A benchmarking study

Imagining the future of bioimage analysis

One plus one makes three (for social networks)

The Mutex Watershed and its Objective: Efficient, Parameter-Free Graph Partitioning

Automated Processing of Zebrafish Imaging Data: A Survey

When less can yield more - Computational preprocessing of MS/MS spectra for peptide identification

NITPICK: peak identification for mass spectrometry data

Multivariate feature selection and hierarchical classification for infrared spectroscopy: serum-based detection of bovine spongiform encephalopathy

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