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Single-cell analysis of HIV-1 transcriptional activity reveals expression of proviruses in expanded clones during ART

Proceedings of the National Academy of Sciences - PNAS, 2017-05, Vol.114 (18), p.E3659-E3668

2017

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HIV-1 in lymph nodes is maintained by cellular proliferation during antiretroviral therapy

The Journal of clinical investigation, 2019-11, Vol.129 (11), p.4629-4642

2019

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Persistent HIV-1 Viremia on Antiretroviral Therapy: Measurement and Mechanisms

Frontiers in microbiology, 2019-10, Vol.10, p.2383-2383

2019

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Ex vivo activation of CD4+ T-cells from donors on suppressive ART can lead to sustained production of infectious HIV-1 from a subset of infected cells

PLoS pathogens, 2017-02, Vol.13 (2), p.e1006230-e1006230

2017

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HIV infected CD4+ T cell clones are more stable than uninfected clones during long-term antiretroviral therapy

PLoS pathogens, 2022-08, Vol.18 (8), p.e1010726-e1010726

2022

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Multiple, Linked Human Immunodeficiency Virus Type 1 Drug Resistance Mutations in Treatment-Experienced Patients Are Missed by Standard Genotype Analysis

Journal of Clinical Microbiology, 2005-01, Vol.43 (1), p.406-413

2005

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Low Frequency Nonnucleoside Reverse-Transcriptase Inhibitor—Resistant Variants Contribute to Failure of Efavirenz-Containing Regimens in Treatment-Experienced Patients

The Journal of infectious diseases, 2010-03, Vol.201 (5), p.672-680

2010

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Early Emergence and Long-Term Persistence of HIV-Infected T-Cell Clones in Children

mBio, 2021-04, Vol.12 (2)

2021

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Tracking HIV-1-Infected Cell Clones Using Integration Site-Specific qPCR

Viruses, 2021-06, Vol.13 (7), p.1235

2021

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Role of low-frequency HIV-1 variants in failure of nevirapine-containing antiviral therapy in women previously exposed to single-dose nevirapine

Proceedings of the National Academy of Sciences - PNAS, 2011-05, Vol.108 (22), p.9202-9207

2011

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HIV-1 viremia not suppressible by antiretroviral therapy can originate from large T cell clones producing infectious virus

The Journal of clinical investigation, 2020-11, Vol.130 (11), p.5847-5857

2020

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Blinded, Multicenter Comparison of Methods To Detect a Drug-Resistant Mutant of Human Immunodeficiency Virus Type 1 at Low Frequency

Journal of Clinical Microbiology, 2006-07, Vol.44 (7), p.2612-2614

2006

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Clonally expanded CD4⁺ T cells can produce infectious HIV-1 in vivo

Proceedings of the National Academy of Sciences - PNAS, 2016-02, Vol.113 (7), p.1883-1888

2016

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Combined HIV-1 sequence and integration site analysis informs viral dynamics and allows reconstruction of replicating viral ancestors

Proceedings of the National Academy of Sciences - PNAS, 2019-12, Vol.116 (51), p.25891-25899

2019

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No evidence of HIV replication in children on antiretroviral therapy

The Journal of clinical investigation, 2017-10, Vol.127 (10), p.3827-3834

2017

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Deep Sequencing Analysis of Individual HIV-1 Proviruses Reveals Frequent Asymmetric Long Terminal Repeats

Journal of virology, 2022-07, Vol.96 (13), p.e0012222-e0012222

2022

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Intact HIV Proviruses Persist in Children Seven to Nine Years after Initiation of Antiretroviral Therapy in the First Year of Life

Journal of virology, 2020-01, Vol.94 (4)

2020

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HIV RNA Screening Reduces Integrase Strand Transfer Inhibitor Resistance Risk in Persons Receiving Long-Acting Cabotegravir for HIV Prevention

The Journal of infectious diseases, 2022-12, Vol.226 (12), p.2170-2180

2022

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Varied Patterns of Decay of Intact Human Immunodeficiency Virus Type 1 Proviruses Over 2 Decades of Antiretroviral Therapy

The Journal of infectious diseases, 2023-06, Vol.227 (12), p.1376-1380

2023

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The Argument Against Testing for INSTI Resistance in Treatment Naive Patients

Clinical infectious diseases, 2018-05, Vol.66 (11), p.1820-1821

2018

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Extended Analysis of HIV Infection in Cisgender Men and Transgender Women Who Have Sex with Men Receiving Injectable Cabotegravir for HIV Prevention: HPTN 083

Antimicrobial agents and chemotherapy, 2023-04, Vol.67 (4), p.e0005323-e0005323

2023

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HIV‐1 drug resistance among individuals who seroconverted in the ASPIRE dapivirine ring trial

Journal of the International AIDS Society, 2021-11, Vol.24 (11), p.e25833-n/a

2021

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Low-Frequency Nevirapine (NVP)-Resistant HIV-1 Variants Are Not Associated With Failure of Antiretroviral Therapy in Women Without Prior Exposure to Single-Dose NVP

The Journal of infectious diseases, 2014-03, Vol.209 (5), p.703-710

2014

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HIV-1-infected T cell clones are shared across cerebrospinal fluid and blood during ART

JCI insight, 2024-04, Vol.9 (7)

2024

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Insertional activation of STAT3 and LCK by HIV-1 proviruses in T cell lymphomas

Science advances, 2021-10, Vol.7 (42), p.eabi8795-eabi8795

2021

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Single-cell analysis of HIV-1 transcriptional activity reveals expression of proviruses in expanded clones during ART

HIV-1 in lymph nodes is maintained by cellular proliferation during antiretroviral therapy

Persistent HIV-1 Viremia on Antiretroviral Therapy: Measurement and Mechanisms

Ex vivo activation of CD4+ T-cells from donors on suppressive ART can lead to sustained production of infectious HIV-1 from a subset of infected cells

HIV infected CD4+ T cell clones are more stable than uninfected clones during long-term antiretroviral therapy

Multiple, Linked Human Immunodeficiency Virus Type 1 Drug Resistance Mutations in Treatment-Experienced Patients Are Missed by Standard Genotype Analysis

Low Frequency Nonnucleoside Reverse-Transcriptase Inhibitor—Resistant Variants Contribute to Failure of Efavirenz-Containing Regimens in Treatment-Experienced Patients

Early Emergence and Long-Term Persistence of HIV-Infected T-Cell Clones in Children

Tracking HIV-1-Infected Cell Clones Using Integration Site-Specific qPCR

Role of low-frequency HIV-1 variants in failure of nevirapine-containing antiviral therapy in women previously exposed to single-dose nevirapine

HIV-1 viremia not suppressible by antiretroviral therapy can originate from large T cell clones producing infectious virus

Blinded, Multicenter Comparison of Methods To Detect a Drug-Resistant Mutant of Human Immunodeficiency Virus Type 1 at Low Frequency

Clonally expanded CD4⁺ T cells can produce infectious HIV-1 in vivo

Combined HIV-1 sequence and integration site analysis informs viral dynamics and allows reconstruction of replicating viral ancestors

No evidence of HIV replication in children on antiretroviral therapy

Deep Sequencing Analysis of Individual HIV-1 Proviruses Reveals Frequent Asymmetric Long Terminal Repeats

Intact HIV Proviruses Persist in Children Seven to Nine Years after Initiation of Antiretroviral Therapy in the First Year of Life

HIV RNA Screening Reduces Integrase Strand Transfer Inhibitor Resistance Risk in Persons Receiving Long-Acting Cabotegravir for HIV Prevention

Varied Patterns of Decay of Intact Human Immunodeficiency Virus Type 1 Proviruses Over 2 Decades of Antiretroviral Therapy

The Argument Against Testing for INSTI Resistance in Treatment Naive Patients

Extended Analysis of HIV Infection in Cisgender Men and Transgender Women Who Have Sex with Men Receiving Injectable Cabotegravir for HIV Prevention: HPTN 083

HIV‐1 drug resistance among individuals who seroconverted in the ASPIRE dapivirine ring trial

Low-Frequency Nevirapine (NVP)-Resistant HIV-1 Variants Are Not Associated With Failure of Antiretroviral Therapy in Women Without Prior Exposure to Single-Dose NVP

HIV-1-infected T cell clones are shared across cerebrospinal fluid and blood during ART

Insertional activation of STAT3 and LCK by HIV-1 proviruses in T cell lymphomas

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