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Modeling Methods for Medical Systems Biology: Regulatory Dynamics Underlying the Emergence of Disease Processes

1st ed. 2018., 2018

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Sinusoidal endothelial dysfunction precedes inflammation and fibrosis in a model of NAFLD

PloS one, 2012-04, Vol.7 (4), p.e32785-e32785

2012

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The impact of PKR activation: from neurodegeneration to cancer

The FASEB journal, 2014-05, Vol.28 (5), p.1965-1974

2014

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MAP17 and SGLT1 protein expression levels as prognostic markers for cervical tumor patient survival

PloS one, 2013-02, Vol.8 (2), p.e56169

2013

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Defining the earliest transcriptional steps of chondrogenic progenitor specification during the formation of the digits in the embryonic limb

PloS one, 2011-09, Vol.6 (9), p.e24546-e24546

2011

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Molecular regionalization of the developing amphioxus neural tube challenges major partitions of the vertebrate brain

PLoS biology, 2017-04, Vol.15 (4), p.e2001573-e2001573

2017

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Differential induction of interferon stimulated genes between type I and type III interferons is independent of interferon receptor abundance

PLoS pathogens, 2018-11, Vol.14 (11), p.e1007420-e1007420

2018

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Mammosphere formation in breast carcinoma cell lines depends upon expression of E-cadherin

PloS one, 2013-10, Vol.8 (10), p.e77281-e77281

2013

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The genome-scale metabolic model for the purple non-sulfur bacterium Rhodopseudomonas palustris Bis A53 accurately predicts phenotypes under chemoheterotrophic, chemoautotrophic, photoheterotrophic, and photoautotrophic growth conditions

PLoS computational biology, 2023-08, Vol.19 (8), p.e1011371-e1011371

2023

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Role of cis-zeatin in root responses to phosphate starvation

The New phytologist, 2019-10, Vol.224 (1), p.242-257

2019

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Expression and functional study of extracellular BMP antagonists during the morphogenesis of the digits and their associated connective tissues

PloS one, 2013-04, Vol.8 (4), p.e60423

2013

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The hypervariable amino-terminus of P1 protease modulates potyviral replication and host defense responses

PLoS pathogens, 2014-03, Vol.10 (3), p.e1003985-e1003985

2014

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Trehalose reverses cell malfunction in fibroblasts from normal and Huntington's disease patients caused by proteosome inhibition

PloS one, 2014-02, Vol.9 (2), p.e90202

2014

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A new view of transcriptome complexity and regulation through the lens of local splicing variations

eLife, 2016-02, Vol.5, p.e11752

2016

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Transcriptomic analysis of Streptomyces coelicolor differentiation in solid sporulating cultures: first compartmentalized and second multinucleated mycelia have different and distinctive transcriptomes

PloS one, 2013-03, Vol.8 (3), p.e60665-e60665

2013

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Microbial diversity in the midguts of field and lab-reared populations of the European corn borer Ostrinia nubilalis

PloS one, 2011-06, Vol.6 (6), p.e21751-e21751

2011

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Deep Macroevolutionary Impact of Humans on New Zealand’s Unique Avifauna

Current biology, 2019-08, Vol.29 (15), p.2563-2569.e4

2019

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Ten simple rules to run a successful BioHackathon

PLoS computational biology, 2020-05, Vol.16 (5), p.e1007808-e1007808

2020

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Galectin-2 induces a proinflammatory, anti-arteriogenic phenotype in monocytes and macrophages

PloS one, 2015-04, Vol.10 (4), p.e0124347-e0124347

2015

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Visceral adiposity index is a better predictor to discriminate metabolic syndrome than other classical adiposity indices among young adults

American journal of human biology, 2023-02, Vol.35 (2), p.e23818-n/a

2023

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Plasma ACE2 species are differentially altered in COVID‐19 patients

The FASEB journal, 2021-08, Vol.35 (8), p.n/a

2021

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Impact of probiotic Saccharomyces boulardii on the gut microbiome composition in HIV-treated patients: A double-blind, randomised, placebo-controlled trial

PloS one, 2017-04, Vol.12 (4), p.e0173802-e0173802

2017

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Genome-wide analysis of protein disorder in Arabidopsis thaliana: implications for plant environmental adaptation

PloS one, 2013-02, Vol.8 (2), p.e55524-e55524

2013

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EphA2-induced angiogenesis in ewing sarcoma cells works through bFGF production and is dependent on caveolin-1

PloS one, 2013-08, Vol.8 (8), p.e71449-e71449

2013

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DNA Methylation Levels of the TBX5 Gene Promoter Are Associated with Congenital Septal Defects in Mexican Paediatric Patients

Biology (Basel, Switzerland), 2022-01, Vol.11 (1), p.96

2022

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Modeling Methods for Medical Systems Biology: Regulatory Dynamics Underlying the Emergence of Disease Processes

Sinusoidal endothelial dysfunction precedes inflammation and fibrosis in a model of NAFLD

The impact of PKR activation: from neurodegeneration to cancer

MAP17 and SGLT1 protein expression levels as prognostic markers for cervical tumor patient survival

Defining the earliest transcriptional steps of chondrogenic progenitor specification during the formation of the digits in the embryonic limb

Molecular regionalization of the developing amphioxus neural tube challenges major partitions of the vertebrate brain

Differential induction of interferon stimulated genes between type I and type III interferons is independent of interferon receptor abundance

Mammosphere formation in breast carcinoma cell lines depends upon expression of E-cadherin

The genome-scale metabolic model for the purple non-sulfur bacterium Rhodopseudomonas palustris Bis A53 accurately predicts phenotypes under chemoheterotrophic, chemoautotrophic, photoheterotrophic, and photoautotrophic growth conditions

Role of cis-zeatin in root responses to phosphate starvation

Expression and functional study of extracellular BMP antagonists during the morphogenesis of the digits and their associated connective tissues

The hypervariable amino-terminus of P1 protease modulates potyviral replication and host defense responses

Trehalose reverses cell malfunction in fibroblasts from normal and Huntington's disease patients caused by proteosome inhibition

A new view of transcriptome complexity and regulation through the lens of local splicing variations

Transcriptomic analysis of Streptomyces coelicolor differentiation in solid sporulating cultures: first compartmentalized and second multinucleated mycelia have different and distinctive transcriptomes

Microbial diversity in the midguts of field and lab-reared populations of the European corn borer Ostrinia nubilalis

Deep Macroevolutionary Impact of Humans on New Zealand’s Unique Avifauna

Ten simple rules to run a successful BioHackathon

Galectin-2 induces a proinflammatory, anti-arteriogenic phenotype in monocytes and macrophages

Visceral adiposity index is a better predictor to discriminate metabolic syndrome than other classical adiposity indices among young adults

Plasma ACE2 species are differentially altered in COVID‐19 patients

Impact of probiotic Saccharomyces boulardii on the gut microbiome composition in HIV-treated patients: A double-blind, randomised, placebo-controlled trial

Genome-wide analysis of protein disorder in Arabidopsis thaliana: implications for plant environmental adaptation

EphA2-induced angiogenesis in ewing sarcoma cells works through bFGF production and is dependent on caveolin-1

DNA Methylation Levels of the TBX5 Gene Promoter Are Associated with Congenital Septal Defects in Mexican Paediatric Patients

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