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Functional long-range RNA-RNA interactions in positive-strand RNA viruses

Nature reviews. Microbiology, 2014-07, Vol.12 (7), p.493-504

2014

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Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends

Nature biotechnology, 2008-08, Vol.26 (8), p.941-946

2008

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KARR-seq reveals cellular higher-order RNA structures and RNA-RNA interactions

Nature biotechnology, 2024-01

2024

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Long noncoding RNA ZFAS1 promoting small nucleolar RNA-mediated 2'-O-methylation via NOP58 recruitment in colorectal cancer

Molecular cancer, 2020-05, Vol.19 (1), p.95-95, Article 95

2020

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KARR-seq maps higher-order RNA structures and RNA-RNA interactions across the transcriptome

Nature biotechnology, 2024-01

2024

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Noncoding RNA therapeutics - challenges and potential solutions

Nature reviews. Drug discovery, 2021-08, Vol.20 (8), p.629-651

2021

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Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

Nature protocols, 2016-09, Vol.11 (9), p.1650-1667

2016

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Drugging RNA

Nature biotechnology, 2023-06, Vol.41 (6), p.745-749

Garber, Ken

2023

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Competing endogenous RNAs: a target-centric view of small RNA regulation in bacteria

Nature reviews. Microbiology, 2016-12, Vol.14 (12), p.775-784

2016

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Optimized RNA ISH, RNA FISH and protein-RNA double labeling (IF/FISH) in Drosophila ovaries

Nature protocols, 2013-11, Vol.8 (11), p.2158-2179

2013

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Predicting dynamic cellular protein-RNA interactions by deep learning using in vivo RNA structures

Cell research, 2021-05, Vol.31 (5), p.495-516

2021

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Regulation of small RNA stability： methylation and beyond

Cell research, 2012-04, Vol.22 (4), p.624-636

2012

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Analysis of RNA-protein networks with RNP-MaP defines functional hubs on RNA

Nature biotechnology, 2021-03, Vol.39 (3), p.347-356

2021

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Evolution of a T7 RNA polymerase variant that transcribes 2′- O -methyl RNA

Nature biotechnology, 2004-09, Vol.22 (9), p.1155-1160

2004

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RNA therapeutics: beyond RNA interference and antisense oligonucleotides

Nature reviews. Drug discovery, 2012-02, Vol.11 (2), p.125-140

2012

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Genome-scale deletion screening of human long non-coding RNAs using a paired-guide RNA CRISPR-Cas9 library

Nature biotechnology, 2016-12, Vol.34 (12), p.1279-1286

2016

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Near-optimal probabilistic RNA-seq quantification

Nature biotechnology, 2016-05, Vol.34 (5), p.525-527

2016

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RNA therapeutics on the rise

Nature reviews. Drug discovery, 2020-07, Vol.19 (7), p.441-442

2020

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YTHDF3 facilitates translation and decay of N 6 -methyladenosine-modified RNA

Cell research, 2017-03, Vol.27 (3), p.315

2017

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Deep proteomic network analysis of Alzheimer's disease brain reveals alterations in RNA binding proteins and RNA splicing associated with disease

Molecular neurodegeneration, 2018-10, Vol.13 (1), p.52-52, Article 52

2018

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CircRNA: functions and properties of a novel potential biomarker for cancer

Molecular cancer, 2017-05, Vol.16 (1), p.94-94, Article 94

2017

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RNA sequencing and swarm intelligence-enhanced classification algorithm development for blood-based disease diagnostics using spliced blood platelet RNA

Nature protocols, 2019-04, Vol.14 (4), p.1206-1234

2019

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Comparison of viral RNA-host protein interactomes across pathogenic RNA viruses informs rapid antiviral drug discovery for SARS-CoV-2

Cell research, 2022-01, Vol.32 (1), p.9-23

2022

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Revealing nascent RNA processing dynamics with nano-COP

Nature protocols, 2021-03, Vol.16 (3), p.1343-1375

2021

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Structural insights into RNA polymerases of negative-sense RNA viruses

Nature reviews. Microbiology, 2021-05, Vol.19 (5), p.303-318

2021

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Functional long-range RNA-RNA interactions in positive-strand RNA viruses

Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends

KARR-seq reveals cellular higher-order RNA structures and RNA-RNA interactions

Long noncoding RNA ZFAS1 promoting small nucleolar RNA-mediated 2'-O-methylation via NOP58 recruitment in colorectal cancer

KARR-seq maps higher-order RNA structures and RNA-RNA interactions across the transcriptome

Noncoding RNA therapeutics - challenges and potential solutions

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

Drugging RNA

Competing endogenous RNAs: a target-centric view of small RNA regulation in bacteria

Optimized RNA ISH, RNA FISH and protein-RNA double labeling (IF/FISH) in Drosophila ovaries

Predicting dynamic cellular protein-RNA interactions by deep learning using in vivo RNA structures

Regulation of small RNA stability： methylation and beyond

Analysis of RNA-protein networks with RNP-MaP defines functional hubs on RNA

Evolution of a T7 RNA polymerase variant that transcribes 2′- O -methyl RNA

RNA therapeutics: beyond RNA interference and antisense oligonucleotides

Genome-scale deletion screening of human long non-coding RNAs using a paired-guide RNA CRISPR-Cas9 library

Near-optimal probabilistic RNA-seq quantification

RNA therapeutics on the rise

YTHDF3 facilitates translation and decay of N 6 -methyladenosine-modified RNA

Deep proteomic network analysis of Alzheimer's disease brain reveals alterations in RNA binding proteins and RNA splicing associated with disease

CircRNA: functions and properties of a novel potential biomarker for cancer

RNA sequencing and swarm intelligence-enhanced classification algorithm development for blood-based disease diagnostics using spliced blood platelet RNA

Comparison of viral RNA-host protein interactomes across pathogenic RNA viruses informs rapid antiviral drug discovery for SARS-CoV-2

Revealing nascent RNA processing dynamics with nano-COP

Structural insights into RNA polymerases of negative-sense RNA viruses

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