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Prediction of disordered regions in proteins based on the meta approach

Bioinformatics, 2008-06, Vol.24 (11), p.1344-1348

2008

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Multi-Omics Profiling Reveals Phenotypic and Functional Heterogeneity of Neutrophils in COVID-19

International journal of molecular sciences, 2024-04, Vol.25 (7), p.3841

2024

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NCMine: Core-peripheral based functional module detection using near-clique mining

Bioinformatics (Oxford, England), 2016-11, Vol.32 (22), p.3454-3460

2016

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Single-cell RNA-seq public data reveal the gene regulatory network landscape of respiratory epithelial and peripheral immune cells in COVID-19 patients

Frontiers in immunology, 2023-10, Vol.14, p.1194614-1194614

2023

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Matataki: an ultrafast mRNA quantification method for large-scale reanalysis of RNA-Seq data

BMC bioinformatics, 2018-07, Vol.19 (1), p.266-266, Article 266

2018

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Landscape of protein–small ligand binding modes

Protein science, 2016-09, Vol.25 (9), p.1659-1671

2016

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ATTED-II in 2018: A Plant Coexpression Database Based on Investigation of the Statistical Property of the Mutual Rank Index

Plant and cell physiology, 2018-01, Vol.59 (1), p.e3-e3

2018

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COXPRESdb v7: a gene coexpression database for 11 animal species supported by 23 coexpression platforms for technical evaluation and evolutionary inference

Nucleic acids research, 2019-01, Vol.47 (D1), p.D55

2019

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IBiSA_Tools: A Computational Toolkit for Ion-Binding State Analysis in Molecular Dynamics Trajectories of Ion Channels

PloS one, 2016-12, Vol.11 (12), p.e0167524-e0167524

2016

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GIANT: pattern analysis of molecular interactions in 3D structures of protein-small ligand complexes

BMC bioinformatics, 2014-01, Vol.15 (1), p.12-12, Article 12

2014

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ATTED-II in 2016: A Plant Coexpression Database Towards Lineage-Specific Coexpression

Plant and cell physiology, 2016-01, Vol.57 (1), p.e5-e5

2016

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ATTED-II v11: A Plant Gene Coexpression Database Using a Sample Balancing Technique by Subagging of Principal Components

Plant and cell physiology, 2022-06, Vol.63 (6), p.869-881

2022

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PrDOS: prediction of disordered protein regions from amino acid sequence

Nucleic acids research, 2007-07, Vol.35 (Web Server issue), p.W460

2007

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SR-B1 Is a Silica Receptor that Mediates Canonical Inflammasome Activation

Cell reports (Cambridge), 2017-01, Vol.18 (5), p.1298-1311

2017

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CEBPB is required for NRF2-mediated drug resistance in NRF2-activated non-small cell lung cancer cells

Journal of biochemistry (Tokyo), 2022-05, Vol.171 (5), p.567

2022

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A 12-kb structural variation in progressive myoclonic epilepsy was newly identified by long-read whole-genome sequencing

Journal of human genetics, 2019-05, Vol.64 (5), p.359-368

2019

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Current status and future perspectives of the evaluation of missense variants by using three-dimensional structures of proteins

Biophysics and Physicobiology, 2022, Vol.19, pp.e190023

2022

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Coexpression landscape in ATTED-II: Usage of gene list and gene network for various types of pathways

Journal of plant research, 2010-05, Vol.123 (3), p.311-319

2010

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Multi-dimensional correlations for gene coexpression and application to the large-scale data of Arabidopsis

Bioinformatics, 2009-10, Vol.25 (20), p.2677-2684

2009

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Enhancer remodeling promotes tumor-initiating activity in NRF2-activated non-small cell lung cancers

Nature communications, 2020-11, Vol.11 (1), p.5911-19, Article 5911

2020

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ATTED-II in 2018: A Plant Coexpression Database Based on Investigation of the Statistical Property of the Mutual Rank Index

Plant and cell physiology, 2018-02, Vol.59 (2), p.440-440

2018

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jMorp updates in 2020: large enhancement of multi-omics data resources on the general Japanese population

Nucleic acids research, 2021-01, Vol.49 (D1), p.D536

2021

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Theoretical characterisation of strand cross-correlation in ChIP-seq

BMC bioinformatics, 2020-09, Vol.21 (1), p.1-417, Article 417

2020

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Identification and Validation of Combination Plasma Biomarker of Afamin, Fibronectin and Sex Hormone-Binding Globulin to Predict Pre-eclampsia

Biological and Pharmaceutical Bulletin, 2021/06/01, Vol.44(6), pp.804-815

2021

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Construction and integration of three de novo Japanese human genome assemblies toward a population-specific reference

Nature communications, 2021-01, Vol.12 (1), p.226-226, Article 226

2021

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Prediction of disordered regions in proteins based on the meta approach

Multi-Omics Profiling Reveals Phenotypic and Functional Heterogeneity of Neutrophils in COVID-19

NCMine: Core-peripheral based functional module detection using near-clique mining

Single-cell RNA-seq public data reveal the gene regulatory network landscape of respiratory epithelial and peripheral immune cells in COVID-19 patients

Matataki: an ultrafast mRNA quantification method for large-scale reanalysis of RNA-Seq data

Landscape of protein–small ligand binding modes

ATTED-II in 2018: A Plant Coexpression Database Based on Investigation of the Statistical Property of the Mutual Rank Index

COXPRESdb v7: a gene coexpression database for 11 animal species supported by 23 coexpression platforms for technical evaluation and evolutionary inference

IBiSA_Tools: A Computational Toolkit for Ion-Binding State Analysis in Molecular Dynamics Trajectories of Ion Channels

GIANT: pattern analysis of molecular interactions in 3D structures of protein-small ligand complexes

ATTED-II in 2016: A Plant Coexpression Database Towards Lineage-Specific Coexpression

ATTED-II v11: A Plant Gene Coexpression Database Using a Sample Balancing Technique by Subagging of Principal Components

PrDOS: prediction of disordered protein regions from amino acid sequence

SR-B1 Is a Silica Receptor that Mediates Canonical Inflammasome Activation

CEBPB is required for NRF2-mediated drug resistance in NRF2-activated non-small cell lung cancer cells

A 12-kb structural variation in progressive myoclonic epilepsy was newly identified by long-read whole-genome sequencing

Current status and future perspectives of the evaluation of missense variants by using three-dimensional structures of proteins

Coexpression landscape in ATTED-II: Usage of gene list and gene network for various types of pathways

Multi-dimensional correlations for gene coexpression and application to the large-scale data of Arabidopsis

Enhancer remodeling promotes tumor-initiating activity in NRF2-activated non-small cell lung cancers

ATTED-II in 2018: A Plant Coexpression Database Based on Investigation of the Statistical Property of the Mutual Rank Index

jMorp updates in 2020: large enhancement of multi-omics data resources on the general Japanese population

Theoretical characterisation of strand cross-correlation in ChIP-seq

Identification and Validation of Combination Plasma Biomarker of Afamin, Fibronectin and Sex Hormone-Binding Globulin to Predict Pre-eclampsia

Construction and integration of three de novo Japanese human genome assemblies toward a population-specific reference

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