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miRWalk: An online resource for prediction of microRNA binding sites

PloS one, 2018-10, Vol.13 (10), p.e0206239-e0206239

2018

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JNSViewer-A JavaScript-based Nucleotide Sequence Viewer for DNA/RNA secondary structures

PloS one, 2017-06, Vol.12 (6), p.e0179040-e0179040

2017

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Construction, visualisation, and clustering of transcription networks from microarray expression data

PLoS computational biology, 2007-10, Vol.3 (10), p.2032-2042

2007

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Dissecting clinical outcome of porcine circovirus type 2 with in vivo derived transcriptomic signatures of host tissue responses

BMC genomics, 2018-11, Vol.19 (1), p.831-831, Article 831

2018

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KEGGscape: a Cytoscape app for pathway data integration [version 1; peer review: 1 approved, 2 approved with reservations]

F1000 research, 2014, Vol.3, p.144-144

2014

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Bioinformatics Resource Manager: a systems biology web tool for microRNA and omics data integration

BMC bioinformatics, 2019-05, Vol.20 (1), p.255-8, Article 255

2019

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tappAS: a comprehensive computational framework for the analysis of the functional impact of differential splicing

Genome Biology, 2020-05, Vol.21 (1), p.119-119, Article 119

2020

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CyNetSVM: A Cytoscape App for Cancer Biomarker Identification Using Network Constrained Support Vector Machines

PloS one, 2017-01, Vol.12 (1), p.e0170482-e0170482

2017

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Infinity: An In-Silico Tool for Genome-Wide Prediction of Specific DNA Matrices in miRNA Genomic Loci

PloS one, 2016-04, Vol.11 (4), p.e0153658-e0153658

2016

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ChromoMap: an R package for interactive visualization of multi-omics data and annotation of chromosomes

BMC bioinformatics, 2022-01, Vol.23 (1), p.33-33, Article 33

2022

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Comparison of statistical methods for subnetwork detection in the integration of gene expression and protein interaction network

BMC bioinformatics, 2017-03, Vol.18 (1), p.149-149, Article 149

2017

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BioGraph: a web application and a graph database for querying and analyzing bioinformatics resources

BMC systems biology, 2018-11, Vol.12 (Suppl 5), p.98-98, Article 98

2018

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DendroX: multi-level multi-cluster selection in dendrograms

BMC genomics, 2024-02, Vol.25 (1), p.134-134, Article 134

2024

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HESML: a real-time semantic measures library for the biomedical domain with a reproducible survey

BMC bioinformatics, 2022-01, Vol.23 (1), p.23-23, Article 23

2022

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Metabopolis: scalable network layout for biological pathway diagrams in urban map style

BMC bioinformatics, 2019-04, Vol.20 (1), p.187-187, Article 187

2019

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TCW: transcriptome computational workbench

PloS one, 2013-07, Vol.8 (7), p.e69401-e69401

2013

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Arena3D: visualizing time-driven phenotypic differences in biological systems

BMC bioinformatics, 2012-03, Vol.13 (1), p.45-45, Article 45

2012

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Open a new epoch of arsenic trioxide investigation: ATOdb

Computers in biology and medicine, 2023-10, Vol.165, p.107465-107465, Article 107465

2023

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Differential analysis of combinatorial protein complexes with CompleXChange

BMC bioinformatics, 2019-06, Vol.20 (1), p.300-300, Article 300

2019

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C-State: an interactive web app for simultaneous multi-gene visualization and comparative epigenetic pattern search

BMC bioinformatics, 2017-09, Vol.18 (Suppl 10), p.392-392, Article 392

2017

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WebGIVI: a web-based gene enrichment analysis and visualization tool

BMC bioinformatics, 2017-05, Vol.18 (1), p.237-237, Article 237

2017

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3D Network exploration and visualisation for lifespan data

BMC bioinformatics, 2018-10, Vol.19 (1), p.390-390, Article 390

2018

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Fangorn Forest (F2): a machine learning approach to classify genes and genera in the family Geminiviridae

BMC bioinformatics, 2017-09, Vol.18 (1), p.431-431, Article 431

2017

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A robust and stable gene selection algorithm based on graph theory and machine learning

Human genomics, 2021-11, Vol.15 (1), p.66-66, Article 66

2021

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EasyCluster2: an improved tool for clustering and assembling long transcriptome reads

BMC bioinformatics, 2014, Vol.15 Suppl 15 (Suppl 15), p.S7-S7, Article S7

2014

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miRWalk: An online resource for prediction of microRNA binding sites

JNSViewer-A JavaScript-based Nucleotide Sequence Viewer for DNA/RNA secondary structures

Construction, visualisation, and clustering of transcription networks from microarray expression data

Dissecting clinical outcome of porcine circovirus type 2 with in vivo derived transcriptomic signatures of host tissue responses

KEGGscape: a Cytoscape app for pathway data integration [version 1; peer review: 1 approved, 2 approved with reservations]

Bioinformatics Resource Manager: a systems biology web tool for microRNA and omics data integration

tappAS: a comprehensive computational framework for the analysis of the functional impact of differential splicing

CyNetSVM: A Cytoscape App for Cancer Biomarker Identification Using Network Constrained Support Vector Machines

Infinity: An In-Silico Tool for Genome-Wide Prediction of Specific DNA Matrices in miRNA Genomic Loci

ChromoMap: an R package for interactive visualization of multi-omics data and annotation of chromosomes

Comparison of statistical methods for subnetwork detection in the integration of gene expression and protein interaction network

BioGraph: a web application and a graph database for querying and analyzing bioinformatics resources

DendroX: multi-level multi-cluster selection in dendrograms

HESML: a real-time semantic measures library for the biomedical domain with a reproducible survey

Metabopolis: scalable network layout for biological pathway diagrams in urban map style

TCW: transcriptome computational workbench

Arena3D: visualizing time-driven phenotypic differences in biological systems

Open a new epoch of arsenic trioxide investigation: ATOdb

Differential analysis of combinatorial protein complexes with CompleXChange

C-State: an interactive web app for simultaneous multi-gene visualization and comparative epigenetic pattern search

WebGIVI: a web-based gene enrichment analysis and visualization tool

3D Network exploration and visualisation for lifespan data

Fangorn Forest (F2): a machine learning approach to classify genes and genera in the family Geminiviridae

A robust and stable gene selection algorithm based on graph theory and machine learning

EasyCluster2: an improved tool for clustering and assembling long transcriptome reads

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