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Archaeological approaches to RNA virus evolution

The Journal of physiology, 2024-06, Vol.602 (11), p.2469-2478

2024

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ViQUF: De Novo Viral Quasispecies Reconstruction Using Unitig-Based Flow Networks

IEEE/ACM transactions on computational biology and bioinformatics, 2023-03, Vol.20 (2), p.1550-1562

2023

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A multiscale model of virus pandemic: Heterogeneous interactive entities in a globally connected world

Mathematical models & methods in applied sciences, 2020-07, Vol.30 (8), p.1591-1651

2020

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Recent advances in inferring viral diversity from high-throughput sequencing data

Virus research, 2017-07, Vol.239, p.17-32

2017

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Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data

Frontiers in microbiology, 2012-01, Vol.3, p.329-329

2012

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Amino Acid Substitutions Associated with Treatment Failure for Hepatitis C Virus Infection

Journal of clinical microbiology, 2020-11, Vol.58 (12)

2020

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Synergistic lethal mutagenesis of hepatitis C virus

Antimicrobial agents and chemotherapy, 2019-12, Vol.63 (12)

2019

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Broad and Dynamic Diversification of Infectious Hepatitis C Virus in a Cell Culture Environment

Journal of virology, 2020-02, Vol.94 (6)

2020

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Viruses as archaeological tools for uncovering ancient molecular relationships

Annals of the New York Academy of Sciences, 2023-11, Vol.1529 (1), p.3-13

2023

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A Virus Is a Community: Diversity within Negative-Sense RNA Virus Populations

Microbiology and molecular biology reviews, 2022-09, Vol.86 (3), p.e0008621-e0008621

2022

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SARS-CoV-2 mutant spectra as variant of concern nurseries: endless variation?

Frontiers in microbiology, 2024, Vol.15, p.1358258-1358258

2024

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Haplotype determination of the Bombyx mori nucleopolyhedrovirus by Nanopore sequencing and linkage of single nucleotide variants

Journal of general virology, 2024-05, Vol.105 (5)

2024

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Complete genome of a novel recombinant human astrovirus and its quasispecies in patients following hematopoietic stem cell transplantation

Virus research, 2020-10, Vol.288, p.198138-198138, Article 198138

2020

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Quasispecies dynamics and clinical significance of hepatitis C virus (HCV) antiviral resistance

International journal of antimicrobial agents, 2020-07, Vol.56 (1), p.105562, Article 105562

Perales, Celia

2020

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Sequencing of serially passaged measles virus affirms its genomic stability and reveals a nonrandom distribution of consensus mutations

Journal of general virology, 2020-04, Vol.101 (4), p.399-409

2020

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Natural languages and RNA virus evolution

The Journal of physiology, 2024-06, Vol.602 (11), p.2565-2580

2024

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Fitness-Dependent, Mild Mutagenic Activity of Sofosbuvir for Hepatitis C Virus

Antimicrobial agents and chemotherapy, 2023-07, Vol.67 (7), p.e0039423-e0039423

2023

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The sociality continuum of viruses: a commentary on Leeks et al. 2023

Journal of evolutionary biology, 2023-11, Vol.36 (11), p.1568-1570

Lequime, Sebastian

2023

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Atypical Mutational Spectrum of SARS-CoV-2 Replicating in the Presence of Ribavirin

Antimicrobial agents and chemotherapy, 2023-01, Vol.67 (1), p.e0131522

2023

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Immune System Deficiencies Do Not Alter SARS-CoV-2 Evolutionary Rate but Favour the Emergence of Mutations by Extending Viral Persistence

Viruses, 2024-03, Vol.16 (3), p.447

2024

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Within-host evolution of virus variants during chronic infection with novel GII.P26-GII.26 norovirus

Journal of clinical virology, 2018-11, Vol.108, p.96-102

2018

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A beginner’s guide for FMDV quasispecies analysis: sub-consensus variant detection and haplotype reconstruction using next-generation sequencing

Briefings in bioinformatics, 2020-09, Vol.21 (5), p.1766-1775

2020

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JC polyomavirus: a short review of its biology, its association with progressive multifocal leukoencephalopathy, and the diagnostic value of different methods to manifest its activity or presence

Expert review of molecular diagnostics, 2023-02, Vol.23 (2), p.143-157

2023

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Phylogeny of beak and feather disease virus in cockatoos demonstrates host generalism and multiple-variant infections within Psittaciformes

Virology (New York, N.Y.), 2014-07, Vol.460, p.72-82

2014

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Viral Fitness Landscapes Based on Self-organizing Maps

Current topics in microbiology and immunology, 2023, Vol.439, p.95-119

2023

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Archaeological approaches to RNA virus evolution

ViQUF: De Novo Viral Quasispecies Reconstruction Using Unitig-Based Flow Networks

A multiscale model of virus pandemic: Heterogeneous interactive entities in a globally connected world

Recent advances in inferring viral diversity from high-throughput sequencing data

Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data

Amino Acid Substitutions Associated with Treatment Failure for Hepatitis C Virus Infection

Synergistic lethal mutagenesis of hepatitis C virus

Broad and Dynamic Diversification of Infectious Hepatitis C Virus in a Cell Culture Environment

Viruses as archaeological tools for uncovering ancient molecular relationships

A Virus Is a Community: Diversity within Negative-Sense RNA Virus Populations

SARS-CoV-2 mutant spectra as variant of concern nurseries: endless variation?

Haplotype determination of the Bombyx mori nucleopolyhedrovirus by Nanopore sequencing and linkage of single nucleotide variants

Complete genome of a novel recombinant human astrovirus and its quasispecies in patients following hematopoietic stem cell transplantation

Quasispecies dynamics and clinical significance of hepatitis C virus (HCV) antiviral resistance

Sequencing of serially passaged measles virus affirms its genomic stability and reveals a nonrandom distribution of consensus mutations

Natural languages and RNA virus evolution

Fitness-Dependent, Mild Mutagenic Activity of Sofosbuvir for Hepatitis C Virus

The sociality continuum of viruses: a commentary on Leeks et al. 2023

Atypical Mutational Spectrum of SARS-CoV-2 Replicating in the Presence of Ribavirin

Immune System Deficiencies Do Not Alter SARS-CoV-2 Evolutionary Rate but Favour the Emergence of Mutations by Extending Viral Persistence

Within-host evolution of virus variants during chronic infection with novel GII.P26-GII.26 norovirus

A beginner’s guide for FMDV quasispecies analysis: sub-consensus variant detection and haplotype reconstruction using next-generation sequencing

JC polyomavirus: a short review of its biology, its association with progressive multifocal leukoencephalopathy, and the diagnostic value of different methods to manifest its activity or presence

Phylogeny of beak and feather disease virus in cockatoos demonstrates host generalism and multiple-variant infections within Psittaciformes

Viral Fitness Landscapes Based on Self-organizing Maps

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