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How to Count Our Microbes? The Effect of Different Quantitative Microbiome Profiling Approaches

Frontiers in cellular and infection microbiology, 2020-08, Vol.10, p.403-403

2020

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Progress in understanding preferential detection of live cells using viability dyes in combination with DNA amplification

Journal of microbiological methods, 2012-11, Vol.91 (2), p.276-289

2012

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Optimization of PMAxx pretreatment to distinguish between human norovirus with intact and altered capsids in shellfish and sewage samples

International journal of food microbiology, 2018-02, Vol.266, p.1-7

2018

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Method-Dependent Implications in Foodborne Pathogen Quantification: The Case of Campylobacter coli Survival on Meat as Comparatively Assessed by Colony Count and Viability PCR

Frontiers in microbiology, 2021-03, Vol.12, p.604933-604933

2021

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Real-time polymerase chain reaction methods for strain specific identification and enumeration of strain Lacticaseibacillus paracasei 8700:2

Frontiers in microbiology, 2023-01, Vol.13, p.1076631

2023

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Real-time PCR methods for identification and stability monitoring of Bifidobacterium longum subsp. longum UABl-14 during shelf life

Frontiers in microbiology, 2024, Vol.15, p.1360241-1360241

2024

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Droplet digital PCR improves absolute quantification of viable lactic acid bacteria in faecal samples

Journal of microbiological methods, 2018-05, Vol.148, p.64-73

2018

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Viability-PCR for the selective detection of Lactobacillus acidophilus and Bifidobacterium bifidum in live bacteria-containing products

Frontiers in microbiology, 2024-07, Vol.15, p.1400529

2024

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Utilizing the state of environmental DNA (eDNA) to incorporate time-scale information into eDNA analysis

Proceedings of the Royal Society. B, Biological sciences, 2023-05, Vol.290 (1999), p.20230979

Jo, Toshiaki S

2023

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Understanding the reaction balances behind the viability PCR protocols based on photoreactive dyes

Journal of microbiological methods, 2023-06, Vol.209, p.106737-106737, Article 106737

2023

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Survival of a surrogate African swine fever virus-like algal virus in feed matrices using a 23-day commercial United States truck transport model

Frontiers in microbiology, 2022-12, Vol.13, p.1059118

2022

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Assessment of physiological responses of bacteria to chlorine and UV disinfection using a plate count method, flow cytometry and viability PCR

Journal of applied microbiology, 2022-03, Vol.132 (3), p.1788-1801

2022

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Review of Chlamydia trachomatis viability methods: assessing the clinical diagnostic impact of NAAT positive results

Expert review of molecular diagnostics, 2018-08, Vol.18 (8), p.739-747

2018

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Improving efficiency of viability‐qPCR for selective detection of infectious HAV in food and water samples

Journal of applied microbiology, 2018-04, Vol.124 (4), p.958-964

2018

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Seeking the environmental source of Leptospirosis reveals durable bacterial viability in river soils

PLoS neglected tropical diseases, 2017-02, Vol.11 (2), p.e0005414-e0005414

2017

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Changes in physiological states of Salmonella Typhimurium measured by qPCR with PMA and DyeTox13 Green Azide after pasteurization and UV treatment

Applied microbiology and biotechnology, 2022-04, Vol.106 (7), p.2739-2750

2022

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Enzymatic and viability RT‐qPCR assays for evaluation of enterovirus, hepatitis A virus and norovirus inactivation: Implications for public health risk assessment

Journal of applied microbiology, 2018-04, Vol.124 (4), p.965-976

2018

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Quantitative detection and survival analysis of VBNC Salmonella Typhimurium in flour using droplet digital PCR and DNA-intercalating dyes

Microbiology spectrum, 2024-07, Vol.12 (8), p.e0024924

2024

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An Improved Real-Time Viability PCR Assay to Detect Salmonella in a Culture-Independent Era

International journal of molecular sciences, 2022-11, Vol.23 (23), p.14708

2022

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Improving efficiency of viability-PCR for selective detection of live cells

Journal of microbiological methods, 2013-04, Vol.93 (1), p.20-24

2013

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Assessment of Comamonas testosteroni strain PT9 as a rapid phthalic acid degrader for industrial wastewaters

Journal of basic microbiology, 2022-03, Vol.62 (3-4), p.508-517

2022

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How to Evaluate Non-Growing Cells-Current Strategies for Determining Antimicrobial Resistance of VBNC Bacteria

Antibiotics (Basel), 2021-01, Vol.10 (2), p.115

2021

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Advancing COVID-19 diagnostics: rapid detection of intact SARS-CoV-2 using viability RT-PCR assay

Microbiology spectrum, 2024-09, Vol.12 (9), p.e0016024

2024

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Molecular Viability Testing of UV-Inactivated Bacteria

Applied and environmental microbiology, 2017-05, Vol.83 (10), p.E00331

2017

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Cultivation of Bacteria From Aplysina aerophoba : Effects of Oxygen and Nutrient Gradients

Frontiers in microbiology, 2020-02, Vol.11, p.175-175

2020

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How to Count Our Microbes? The Effect of Different Quantitative Microbiome Profiling Approaches

Progress in understanding preferential detection of live cells using viability dyes in combination with DNA amplification

Optimization of PMAxx pretreatment to distinguish between human norovirus with intact and altered capsids in shellfish and sewage samples

Method-Dependent Implications in Foodborne Pathogen Quantification: The Case of Campylobacter coli Survival on Meat as Comparatively Assessed by Colony Count and Viability PCR

Real-time polymerase chain reaction methods for strain specific identification and enumeration of strain Lacticaseibacillus paracasei 8700:2

Real-time PCR methods for identification and stability monitoring of Bifidobacterium longum subsp. longum UABl-14 during shelf life

Droplet digital PCR improves absolute quantification of viable lactic acid bacteria in faecal samples

Viability-PCR for the selective detection of Lactobacillus acidophilus and Bifidobacterium bifidum in live bacteria-containing products

Utilizing the state of environmental DNA (eDNA) to incorporate time-scale information into eDNA analysis

Understanding the reaction balances behind the viability PCR protocols based on photoreactive dyes

Survival of a surrogate African swine fever virus-like algal virus in feed matrices using a 23-day commercial United States truck transport model

Assessment of physiological responses of bacteria to chlorine and UV disinfection using a plate count method, flow cytometry and viability PCR

Review of Chlamydia trachomatis viability methods: assessing the clinical diagnostic impact of NAAT positive results

Improving efficiency of viability‐qPCR for selective detection of infectious HAV in food and water samples

Seeking the environmental source of Leptospirosis reveals durable bacterial viability in river soils

Changes in physiological states of Salmonella Typhimurium measured by qPCR with PMA and DyeTox13 Green Azide after pasteurization and UV treatment

Enzymatic and viability RT‐qPCR assays for evaluation of enterovirus, hepatitis A virus and norovirus inactivation: Implications for public health risk assessment

Quantitative detection and survival analysis of VBNC Salmonella Typhimurium in flour using droplet digital PCR and DNA-intercalating dyes

An Improved Real-Time Viability PCR Assay to Detect Salmonella in a Culture-Independent Era

Improving efficiency of viability-PCR for selective detection of live cells

Assessment of Comamonas testosteroni strain PT9 as a rapid phthalic acid degrader for industrial wastewaters

How to Evaluate Non-Growing Cells-Current Strategies for Determining Antimicrobial Resistance of VBNC Bacteria

Advancing COVID-19 diagnostics: rapid detection of intact SARS-CoV-2 using viability RT-PCR assay

Molecular Viability Testing of UV-Inactivated Bacteria

Cultivation of Bacteria From Aplysina aerophoba : Effects of Oxygen and Nutrient Gradients

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