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Review of Clinical Next-Generation Sequencing

Archives of pathology & laboratory medicine (1976), 2017-11, Vol.141 (11), p.1544-1557

2017

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A 16S rRNA gene sequencing and analysis protocol for the Illumina MiniSeq platform

MicrobiologyOpen (Weinheim), 2018-12, Vol.7 (6), p.e00611-n/a

2018

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Sequence capture using PCR‐generated probes: a cost‐effective method of targeted high‐throughput sequencing for nonmodel organisms

Molecular ecology resources, 2014-09, Vol.14 (5), p.1000-1010

2014

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PipeCraft: Flexible open‐source toolkit for bioinformatics analysis of custom high‐throughput amplicon sequencing data

Molecular ecology resources, 2017-11, Vol.17 (6), p.e234-e240

2017

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Recent Advances on Detection and Characterization of Fruit Tree Viruses Using High-Throughput Sequencing Technologies

Viruses, 2018-08, Vol.10 (8), p.436

2018

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Optimized metabarcoding with Pacific biosciences enables semi-quantitative analysis of fungal communities

The New phytologist, 2020-11, Vol.228 (3), p.1149-1158

2020

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Bioinformatics Methods: From Omics to Next Generation Sequencing

1st, 2023

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Integrating high‐throughput screening and sequencing for monoclonal antibody discovery and engineering

Immunology, 2018-01, Vol.153 (1), p.31-41

2018

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Differential microRNA expression in the peripheral blood from human patients with COVID‐19

Journal of clinical laboratory analysis, 2020-10, Vol.34 (10), p.e23590-n/a

2020

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A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

Briefings in bioinformatics, 2013-11, Vol.14 (6), p.671-683

2013

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Characteristics and prognostic significance of profiling the peripheral blood T‐cell receptor repertoire in patients with advanced lung cancer

International journal of cancer, 2019-09, Vol.145 (5), p.1423-1431

2019

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Comparative study on gastrointestinal microbiota of eight fish species with different feeding habits

Journal of applied microbiology, 2014-12, Vol.117 (6), p.1750-1760

2014

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Combining bleach and mild predigestion improves ancient DNA recovery from bones

Molecular ecology resources, 2017-07, Vol.17 (4), p.742-751

2017

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High‐throughput identification and diagnostics of pathogens and pests: Overview and practical recommendations

Molecular ecology resources, 2019-01, Vol.19 (1), p.47-76

2019

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Environmental microbiology through the lens of high-throughput DNA sequencing: Synopsis of current platforms and bioinformatics approaches

Journal of microbiological methods, 2012-10, Vol.91 (1), p.106-113

2012

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High‐throughput microsatellite genotyping in ecology: improved accuracy, efficiency, standardization and success with low‐quantity and degraded DNA

Molecular ecology resources, 2017-05, Vol.17 (3), p.492-507

2017

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Rapid bacterial genome sequencing: methods and applications in clinical microbiology

Clinical microbiology and infection, 2013-09, Vol.19 (9), p.803-813

2013

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Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

The ISME Journal, 2012-08, Vol.6 (8), p.1621-1624

2012

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Seq-Well: portable, low-cost RNA sequencing of single cells at high throughput

Nature methods, 2017-04, Vol.14 (4), p.395-398

2017

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5S‐IGS rDNA in wind‐pollinated trees (Fagus L.) encapsulates 55 million years of reticulate evolution and hybrid origins of modern species

The Plant journal : for cell and molecular biology, 2022-02, Vol.109 (4), p.909-926

2022

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KRAS/GNAS‐testing by highly sensitive deep targeted next generation sequencing improves the endoscopic ultrasound‐guided workup of suspected mucinous neoplasms of the pancreas

Genes chromosomes & cancer, 2021-07, Vol.60 (7), p.489-497

2021

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STRipy: A graphical application for enhanced genotyping of pathogenic short tandem repeats in sequencing data

Human mutation, 2022-07, Vol.43 (7), p.859-868

2022

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CircRNA expression profiles and function prediction in peripheral blood mononuclear cells of patients with acute ischemic stroke

Journal of cellular physiology, 2020-03, Vol.235 (3), p.2609-2618

2020

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Introduction: The host‐associated microbiome: Pattern, process and function

Molecular ecology, 2018-04, Vol.27 (8), p.1749-1765

2018

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Protist Diversity and Seasonal Dynamics in Skagerrak Plankton Communities as Revealed by Metabarcoding and Microscopy

The Journal of eukaryotic microbiology, 2019-05, Vol.66 (3), p.494-513

2019

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Review of Clinical Next-Generation Sequencing

A 16S rRNA gene sequencing and analysis protocol for the Illumina MiniSeq platform

Sequence capture using PCR‐generated probes: a cost‐effective method of targeted high‐throughput sequencing for nonmodel organisms

PipeCraft: Flexible open‐source toolkit for bioinformatics analysis of custom high‐throughput amplicon sequencing data

Recent Advances on Detection and Characterization of Fruit Tree Viruses Using High-Throughput Sequencing Technologies

Optimized metabarcoding with Pacific biosciences enables semi-quantitative analysis of fungal communities

Bioinformatics Methods: From Omics to Next Generation Sequencing

Integrating high‐throughput screening and sequencing for monoclonal antibody discovery and engineering

Differential microRNA expression in the peripheral blood from human patients with COVID‐19

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

Characteristics and prognostic significance of profiling the peripheral blood T‐cell receptor repertoire in patients with advanced lung cancer

Comparative study on gastrointestinal microbiota of eight fish species with different feeding habits

Combining bleach and mild predigestion improves ancient DNA recovery from bones

High‐throughput identification and diagnostics of pathogens and pests: Overview and practical recommendations

Environmental microbiology through the lens of high-throughput DNA sequencing: Synopsis of current platforms and bioinformatics approaches

High‐throughput microsatellite genotyping in ecology: improved accuracy, efficiency, standardization and success with low‐quantity and degraded DNA

Rapid bacterial genome sequencing: methods and applications in clinical microbiology

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

Seq-Well: portable, low-cost RNA sequencing of single cells at high throughput

5S‐IGS rDNA in wind‐pollinated trees (Fagus L.) encapsulates 55 million years of reticulate evolution and hybrid origins of modern species

KRAS/GNAS‐testing by highly sensitive deep targeted next generation sequencing improves the endoscopic ultrasound‐guided workup of suspected mucinous neoplasms of the pancreas

STRipy: A graphical application for enhanced genotyping of pathogenic short tandem repeats in sequencing data

CircRNA expression profiles and function prediction in peripheral blood mononuclear cells of patients with acute ischemic stroke

Introduction: The host‐associated microbiome: Pattern, process and function

Protist Diversity and Seasonal Dynamics in Skagerrak Plankton Communities as Revealed by Metabarcoding and Microscopy

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