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Phylogenomics and plastome evolution of a Brazilian mycoheterotrophic orchid, Pogoniopsis schenckii

American journal of botany, 2022-12, Vol.109 (12), p.2030-2050

2022

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Genome-Wide Analysis of Nubian Ibex Reveals Candidate Positively Selected Genes That Contribute to Its Adaptation to the Desert Environment

Animals (Basel), 2020-11, Vol.10 (11), p.2181

2020

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Coelacanth-specific adaptive genes give insights into primitive evolution for water-to-land transition of tetrapods

Marine genomics, 2018-04, Vol.38, p.89-95

2018

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Pseudofinder: Detection of Pseudogenes in Prokaryotic Genomes

Molecular biology and evolution, 2022-07, Vol.39 (7)

2022

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Molecular Phylogeny and Adaptive Mitochondrial DNA Evolution of Salmonids (Pisces: Salmonidae)

Frontiers in genetics, 2022-06, Vol.13, p.903240-903240

2022

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Comparative Analysis of SARS-CoV-2 Variants of Concern, Including Omicron, Highlights Their Common and Distinctive Amino Acid Substitution Patterns, Especially at the Spike ORF

Viruses, 2022-03, Vol.14 (4), p.707

2022

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Slow crabs ‐ fast genomes: Locomotory capacity predicts skew magnitude in crustacean mitogenomes

Molecular ecology, 2021-11, Vol.30 (21), p.5488-5502

2021

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The Multifaceted Role of Homologous Recombination in a Fastidious Bacterial Plant Pathogen

Applied and environmental microbiology, 2023-05, Vol.89 (5), p.e0043923-e0043923

2023

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Fitness effects of mutations to SARS-CoV-2 proteins

Virus evolution, 2023-12, Vol.9 (2), p.vead055-vead055

2023

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Faster Rates of Molecular Sequence Evolution in Reproduction-Related Genes and in Species with Hypodermic Sperm Morphologies

Molecular biology and evolution, 2021-12, Vol.38 (12), p.5685-5703

2021

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Recombination Rate Variation Modulates Gene Sequence Evolution Mainly via GC-Biased Gene Conversion, Not Hill-Robertson Interference, in an Avian System

Molecular biology and evolution, 2016-01, Vol.33 (1), p.216-227

2016

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Nonsynonymous Polymorphism Counts in Bacterial Genomes: a Comparative Examination

Applied and environmental microbiology, 2020-12, Vol.87 (1), p.1

2020

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The positive correlation between dN/dS and dS in mammals is due to runs of adjacent substitutions

Molecular biology and evolution, 2011-04, Vol.28 (4), p.1371-1380

2011

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Analysis of 3.5 million SARS-CoV-2 sequences reveals unique mutational trends with consistent nucleotide and codon frequencies

Virology journal, 2023-02, Vol.20 (1), p.31-31, Article 31

2023

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Genetic Characterization of Small Ruminant Lentiviruses (SRLVs) Circulating in Naturally Infected Sheep in Central Italy

Viruses, 2022-03, Vol.14 (4), p.686

2022

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Genetic drift and mutational hazard in the evolution of salamander genomic gigantism

Evolution, 2016-12, Vol.70 (12), p.2865-2878

2016

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Genomic Analyses Uncover Evolutionary Features of Influenza A/H3N2 Viruses in Yunnan Province, China, from 2017 to 2022

Viruses, 2024-01, Vol.16 (1), p.138

2024

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The Fast and the Furriest: Investigating the Rate of Selection on Mammalian Toxins

Toxins, 2022-12, Vol.14 (12), p.842

2022

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Extensively Parameterized Mutation-Selection Models Reliably Capture Site-Specific Selective Constraint

Molecular biology and evolution, 2016-11, Vol.33 (11), p.2990-3002

2016

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Complete structure and variation of the chloroplast genome of Agropyron cristatum (L.) Gaertn

Gene, 2018-01, Vol.640, p.86-96

2018

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Transcriptomic analysis of candidate osmoregulatory genes in the eastern oyster Crassostrea virginica

BMC genomics, 2014-06, Vol.15 (1), p.503-503

2014

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The molecular origin and evolution of dim-light vision in mammals

Evolution, 2015-11, Vol.69 (11), p.2995-3003

2015

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Correlation between sequence divergence and polymorphism reveals similar evolutionary mechanisms acting across multiple timescales in a rapidly evolving plastid genome

BMC evolutionary biology, 2014-12, Vol.14, p.268

2014

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Non-synonymous to synonymous substitutions suggest that orthologs tend to keep their functions, while paralogs are a source of functional novelty

PeerJ (San Francisco, CA), 2022-08, Vol.10, p.e13843-e13843, Article e13843

2022

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BASE: A novel workflow to integrate nonubiquitous genes in comparative genomics analyses for selection

Ecology and evolution, 2021-10, Vol.11 (19), p.13029-13035

2021

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Phylogenomics and plastome evolution of a Brazilian mycoheterotrophic orchid, Pogoniopsis schenckii

Genome-Wide Analysis of Nubian Ibex Reveals Candidate Positively Selected Genes That Contribute to Its Adaptation to the Desert Environment

Coelacanth-specific adaptive genes give insights into primitive evolution for water-to-land transition of tetrapods

Pseudofinder: Detection of Pseudogenes in Prokaryotic Genomes

Molecular Phylogeny and Adaptive Mitochondrial DNA Evolution of Salmonids (Pisces: Salmonidae)

Comparative Analysis of SARS-CoV-2 Variants of Concern, Including Omicron, Highlights Their Common and Distinctive Amino Acid Substitution Patterns, Especially at the Spike ORF

Slow crabs ‐ fast genomes: Locomotory capacity predicts skew magnitude in crustacean mitogenomes

The Multifaceted Role of Homologous Recombination in a Fastidious Bacterial Plant Pathogen

Fitness effects of mutations to SARS-CoV-2 proteins

Faster Rates of Molecular Sequence Evolution in Reproduction-Related Genes and in Species with Hypodermic Sperm Morphologies

Recombination Rate Variation Modulates Gene Sequence Evolution Mainly via GC-Biased Gene Conversion, Not Hill-Robertson Interference, in an Avian System

Nonsynonymous Polymorphism Counts in Bacterial Genomes: a Comparative Examination

The positive correlation between dN/dS and dS in mammals is due to runs of adjacent substitutions

Analysis of 3.5 million SARS-CoV-2 sequences reveals unique mutational trends with consistent nucleotide and codon frequencies

Genetic Characterization of Small Ruminant Lentiviruses (SRLVs) Circulating in Naturally Infected Sheep in Central Italy

Genetic drift and mutational hazard in the evolution of salamander genomic gigantism

Genomic Analyses Uncover Evolutionary Features of Influenza A/H3N2 Viruses in Yunnan Province, China, from 2017 to 2022

The Fast and the Furriest: Investigating the Rate of Selection on Mammalian Toxins

Extensively Parameterized Mutation-Selection Models Reliably Capture Site-Specific Selective Constraint

Complete structure and variation of the chloroplast genome of Agropyron cristatum (L.) Gaertn

Transcriptomic analysis of candidate osmoregulatory genes in the eastern oyster Crassostrea virginica

The molecular origin and evolution of dim-light vision in mammals

Correlation between sequence divergence and polymorphism reveals similar evolutionary mechanisms acting across multiple timescales in a rapidly evolving plastid genome

Non-synonymous to synonymous substitutions suggest that orthologs tend to keep their functions, while paralogs are a source of functional novelty

BASE: A novel workflow to integrate nonubiquitous genes in comparative genomics analyses for selection

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