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Case Study: Prolonged Infectious SARS-CoV-2 Shedding from an Asymptomatic Immunocompromised Individual with Cancer

Cell, 2020-12, Vol.183 (7), p.1901-1912.e9

2020

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The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK

Virus evolution, 2022-12, Vol.8 (2), p.veac080

2022

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Within-host evolutionary dynamics and tissue compartmentalization during acute SARS-CoV-2 infection

Journal of virology, 2024-01, Vol.98 (1), p.e0161823

2024

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Within-Host Rhinovirus Evolution in Upper and Lower Respiratory Tract Highlights Capsid Variability and Mutation-Independent Compartmentalization

The Journal of infectious diseases, 2024-02, Vol.229 (2), p.403-412

2024

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Case Commentary: The hidden side of oxacillin resistance in Staphylococcus aureus

Antimicrobial agents and chemotherapy, 2023-10, Vol.67 (10), p.e0071623-e0071623

2023

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Common Adaptive Strategies Underlie Within-Host Evolution of Bacterial Pathogens

Molecular biology and evolution, 2021-03, Vol.38 (3), p.1101-1121

2021

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Host-Specific Adaptive Diversification of Crohn’s Disease-Associated Adherent-Invasive Escherichia coli

Cell host & microbe, 2019-02, Vol.25 (2), p.301-312.e5

2019

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Secondary messenger signalling influences Pseudomonas aeruginosa adaptation to sinus and lung environments

The ISME Journal, 2024-01, Vol.18 (1)

2024

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Within-host resistance evolution of a fatal ST11 hypervirulent carbapenem-resistant Klebsiella pneumoniae

International journal of antimicrobial agents, 2023-04, Vol.61 (4), p.106747-106747, Article 106747

2023

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Emergence and Inter- and Intrahost Evolution of Pandrug-Resistant Klebsiella pneumoniae Coharboring tmexCD1-toprJ1, blaNDM-1, and blaKPC-2

Microbiology spectrum, 2023-01, Vol.11 (2), p.e0278622-e0278622

2023

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Pulsed antibiotic treatments of gnotobiotic mice manifest in complex bacterial community dynamics and resistance effects

Cell host & microbe, 2023-06, Vol.31 (6), p.1007-1020.e4

2023

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Mechanisms and Concepts in RNA Virus Population Dynamics and Evolution

Annual review of virology, 2018-09, Vol.5 (1), p.69-92

2018

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The within-host population dynamics of Mycobacterium tuberculosis vary with treatment efficacy

Genome Biology, 2017-04, Vol.18 (1), p.71-71, Article 71

2017

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Causes and Consequences of Spatial Within-Host Viral Spread

Viruses, 2018-11, Vol.10 (11), p.627

2018

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Niche-specific genome degradation and convergent evolution shaping Staphylococcus aureus adaptation during severe infections

eLife, 2022-06, Vol.11

2022

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Reconstruction of Microbial Haplotypes by Integration of Statistical and Physical Linkage in Scaffolding

Molecular biology and evolution, 2021-05, Vol.38 (6), p.2660-2672

2021

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Convergent Evolution of Antibiotic Tolerance in Patients with Persistent Methicillin-Resistant Staphylococcus aureus Bacteremia

Infection and immunity, 2022-04, Vol.90 (4), p.e0000122-e0000122

2022

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Severe infections emerge from commensal bacteria by adaptive evolution

eLife, 2017-12, Vol.6

2017

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Evolution of Acinetobacter baumannii In Vivo : International Clone II, More Resistance to Ceftazidime, Mutation in ptk

Frontiers in microbiology, 2017-07, Vol.8, p.1256-1256

2017

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Within-Host Evolution of SARS-CoV-2 in a B-Cell Depleted Patient With Successful Treatment

Journal of Korean Medical Science, 2023, 38(22), , pp.1-8

2023

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Single-genome sequencing reveals within-host evolution of human malaria parasites

Cell host & microbe, 2021-10, Vol.29 (10), p.1496-1506.e3

2021

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A 4.5-Year Within-Patient Evolution of a Colistin-Resistant Klebsiella pneumoniae Carbapenemase-Producing K. pneumoniae Sequence Type 258

Clinical infectious diseases, 2018-10, Vol.67 (9), p.1388-1394

2018

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Within-Host Evolution of Burkholderia pseudomallei during Chronic Infection of Seven Australasian Cystic Fibrosis Patients

mBio, 2017-04, Vol.8 (2)

2017

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Within-host acquisition of colistin-resistance of an NDM-producing Klebsiella quasipneumoniae subsp. similipneumoniae strain through the insertion sequence-903B-mediated inactivation of mgrB gene in a lung transplant child in China

Frontiers in cellular and infection microbiology, 2023-08, Vol.13, p.1153387-1153387

2023

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Evolution of within-host variants of the hepatitis C virus

Infection, genetics and evolution, 2022-04, Vol.99, p.105242-105242, Article 105242

2022

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Case Study: Prolonged Infectious SARS-CoV-2 Shedding from an Asymptomatic Immunocompromised Individual with Cancer

The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK

Within-host evolutionary dynamics and tissue compartmentalization during acute SARS-CoV-2 infection

Within-Host Rhinovirus Evolution in Upper and Lower Respiratory Tract Highlights Capsid Variability and Mutation-Independent Compartmentalization

Case Commentary: The hidden side of oxacillin resistance in Staphylococcus aureus

Common Adaptive Strategies Underlie Within-Host Evolution of Bacterial Pathogens

Host-Specific Adaptive Diversification of Crohn’s Disease-Associated Adherent-Invasive Escherichia coli

Secondary messenger signalling influences Pseudomonas aeruginosa adaptation to sinus and lung environments

Within-host resistance evolution of a fatal ST11 hypervirulent carbapenem-resistant Klebsiella pneumoniae

Emergence and Inter- and Intrahost Evolution of Pandrug-Resistant Klebsiella pneumoniae Coharboring tmexCD1-toprJ1, blaNDM-1, and blaKPC-2

Pulsed antibiotic treatments of gnotobiotic mice manifest in complex bacterial community dynamics and resistance effects

Mechanisms and Concepts in RNA Virus Population Dynamics and Evolution

The within-host population dynamics of Mycobacterium tuberculosis vary with treatment efficacy

Causes and Consequences of Spatial Within-Host Viral Spread

Niche-specific genome degradation and convergent evolution shaping Staphylococcus aureus adaptation during severe infections

Reconstruction of Microbial Haplotypes by Integration of Statistical and Physical Linkage in Scaffolding

Convergent Evolution of Antibiotic Tolerance in Patients with Persistent Methicillin-Resistant Staphylococcus aureus Bacteremia

Severe infections emerge from commensal bacteria by adaptive evolution

Evolution of Acinetobacter baumannii In Vivo : International Clone II, More Resistance to Ceftazidime, Mutation in ptk

Within-Host Evolution of SARS-CoV-2 in a B-Cell Depleted Patient With Successful Treatment

Single-genome sequencing reveals within-host evolution of human malaria parasites

A 4.5-Year Within-Patient Evolution of a Colistin-Resistant Klebsiella pneumoniae Carbapenemase-Producing K. pneumoniae Sequence Type 258

Within-Host Evolution of Burkholderia pseudomallei during Chronic Infection of Seven Australasian Cystic Fibrosis Patients

Within-host acquisition of colistin-resistance of an NDM-producing Klebsiella quasipneumoniae subsp. similipneumoniae strain through the insertion sequence-903B-mediated inactivation of mgrB gene in a lung transplant child in China

Evolution of within-host variants of the hepatitis C virus

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