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Regulation by 3'-Untranslated Regions

Annual review of genetics, 2017-11, Vol.51 (1), p.171-194

Mayr, Christine

2017

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Metazoan MicroRNAs

Cell, 2018-03, Vol.173 (1), p.20-51

Bartel, David P.

2018

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Alternative 3′ UTRs act as scaffolds to regulate membrane protein localization

Nature (London), 2015-06, Vol.522 (7556), p.363-367

2015

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Alternative 3′-end processing of long noncoding RNA initiates construction of nuclear paraspeckles

The EMBO journal, 2012-10, Vol.31 (20), p.4020-4034

2012

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Stability, delivery and functions of human sperm RNAs at fertilization

Nucleic acids research, 2013-04, Vol.41 (7), p.4104-4117

2013

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CRISPR artificial splicing factors

Nature communications, 2020-06, Vol.11 (1), p.2973-11, Article 2973

2020

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ADARs and editing: The role of A-to-I RNA modification in cancer progression

Seminars in cell & developmental biology, 2018-07, Vol.79, p.123-130

2018

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Beyond the one-locus-one-miRNA paradigm: microRNA isoforms enable deeper insights into breast cancer heterogeneity

Nucleic acids research, 2015-10, Vol.43 (19), p.9158-9175

2015

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Knowledge about the presence or absence of miRNA isoforms (isomiRs) can successfully discriminate amongst 32 TCGA cancer types

Nucleic acids research, 2017-04, Vol.45 (6), p.2973-2985

2017

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The Dynamics of Cytoplasmic mRNA Metabolism

Molecular cell, 2020-02, Vol.77 (4), p.786-799.e10

2020

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EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments

Bioinformatics, 2013-04, Vol.29 (8), p.1035-1043

2013

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Full-length transcriptome reconstruction reveals a large diversity of RNA and protein isoforms in rat hippocampus

Nature communications, 2019-11, Vol.10 (1), p.5009-15, Article 5009

2019

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NEAT1 polyA-modulating antisense oligonucleotides reveal opposing functions for both long non-coding RNA isoforms in neuroblastoma

Cellular and molecular life sciences : CMLS, 2021-03, Vol.78 (5), p.2213-2230

2021

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Comprehensive catalog of dendritically localized mRNA isoforms from sub-cellular sequencing of single mouse neurons

BMC biology, 2019-01, Vol.17 (1), p.5-5, Article 5

2019

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Comprehensive identification of mRNA isoforms reveals the diversity of neural cell-surface molecules with roles in retinal development and disease

Nature communications, 2020-07, Vol.11 (1), p.3328-3328, Article 3328

2020

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Emerging Roles for 3' UTRs in Neurons

International journal of molecular sciences, 2020-05, Vol.21 (10), p.3413

2020

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Uncovering the dynamics and consequences of RNA isoform changes during neuronal differentiation

Molecular systems biology, 2024-07, Vol.20 (7), p.767-798

2024

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IsoVis - a webserver for visualization and annotation of alternative RNA isoforms

Nucleic acids research, 2024-07, Vol.52 (W1), p.W341-W347

2024

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Isoform‐resolved correlation analysis between mRNA abundance regulation and protein level degradation

Molecular systems biology, 2020-03, Vol.16 (3), p.e9170-n/a

2020

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Developmentally regulated alternate 3' end cleavage of nascent transcripts controls dynamic changes in protein expression in an adult stem cell lineage

Genes & development, 2022-08, Vol.36 (15-16), p.916-935

2022

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The emerging theme of 3'UTR mRNA isoform regulation in reprogramming of cell metabolism

Biochemical Society transactions, 2023-06, Vol.51 (3), p.1111

2023

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Altered cell and RNA isoform diversity in aging Down syndrome brains

Proceedings of the National Academy of Sciences - PNAS, 2021-11, Vol.118 (47), p.1-11

2021

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IsomiRs: Expanding the miRNA repression toolbox beyond the seed

Biochimica et biophysica acta. Gene regulatory mechanisms, 2020-04, Vol.1863 (4), p.194373-194373, Article 194373

2020

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HMGA2 functions as a competing endogenous RNA to promote lung cancer progression

Nature (London), 2014-01, Vol.505 (7482), p.212-217

2014

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Single-cell characterization of CRISPR-modified transcript isoforms with nanopore sequencing

Genome Biology, 2021-12, Vol.22 (1), p.331-331, Article 331

2021

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Regulation by 3'-Untranslated Regions

Metazoan MicroRNAs

Alternative 3′ UTRs act as scaffolds to regulate membrane protein localization

Alternative 3′-end processing of long noncoding RNA initiates construction of nuclear paraspeckles

Stability, delivery and functions of human sperm RNAs at fertilization

CRISPR artificial splicing factors

ADARs and editing: The role of A-to-I RNA modification in cancer progression

Beyond the one-locus-one-miRNA paradigm: microRNA isoforms enable deeper insights into breast cancer heterogeneity

Knowledge about the presence or absence of miRNA isoforms (isomiRs) can successfully discriminate amongst 32 TCGA cancer types

The Dynamics of Cytoplasmic mRNA Metabolism

EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments

Full-length transcriptome reconstruction reveals a large diversity of RNA and protein isoforms in rat hippocampus

NEAT1 polyA-modulating antisense oligonucleotides reveal opposing functions for both long non-coding RNA isoforms in neuroblastoma

Comprehensive catalog of dendritically localized mRNA isoforms from sub-cellular sequencing of single mouse neurons

Comprehensive identification of mRNA isoforms reveals the diversity of neural cell-surface molecules with roles in retinal development and disease

Emerging Roles for 3' UTRs in Neurons

Uncovering the dynamics and consequences of RNA isoform changes during neuronal differentiation

IsoVis - a webserver for visualization and annotation of alternative RNA isoforms

Isoform‐resolved correlation analysis between mRNA abundance regulation and protein level degradation

Developmentally regulated alternate 3' end cleavage of nascent transcripts controls dynamic changes in protein expression in an adult stem cell lineage

The emerging theme of 3'UTR mRNA isoform regulation in reprogramming of cell metabolism

Altered cell and RNA isoform diversity in aging Down syndrome brains

IsomiRs: Expanding the miRNA repression toolbox beyond the seed

HMGA2 functions as a competing endogenous RNA to promote lung cancer progression

Single-cell characterization of CRISPR-modified transcript isoforms with nanopore sequencing

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