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Stacks: an analysis tool set for population genomics

Molecular ecology, 2013-06, Vol.22 (11), p.3124-3140

2013

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Lost in parameter space: a road map for stacks

Methods in ecology and evolution, 2017-10, Vol.8 (10), p.1360-1373

2017

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Sympatric parallel diversification of major oak clades in the Americas and the origins of Mexican species diversity

The New phytologist, 2018-01, Vol.217 (1), p.439-452

2018

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Genomic landscape of the global oak phylogeny

The New phytologist, 2020-05, Vol.226 (4), p.1198-1212

2020

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Genome-wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in the Lake Victoria cichlid adaptive radiation

Molecular ecology, 2013-02, Vol.22 (3), p.787-798

2013

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Bioinformatic processing of RAD‐seq data dramatically impacts downstream population genetic inference

Methods in ecology and evolution, 2017-08, Vol.8 (8), p.907-917

2017

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Genotyping-by-sequencing in ecological and conservation genomics

Molecular ecology, 2013-06, Vol.22 (11), p.2841-2847

2013

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Practical considerations for plant phylogenomics

Applications in plant sciences, 2018-03, Vol.6 (3), p.e1038-n/a

2018

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East Asian origins of European holly oaks (Quercus section Ilex Loudon) via the Tibet‐Himalaya

Journal of biogeography, 2019-10, Vol.46 (10), p.2203-2214

2019

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Genomic insights into adaptation to heterogeneous environments for the ancient relictual Circaeaster agrestis (Circaeasteraceae, Ranunculales)

The New phytologist, 2020-10, Vol.228 (1), p.285-301

2020

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Genomic variation at the tips of the adaptive radiation of Darwin's finches

Molecular ecology, 2016-11, Vol.25 (21), p.5282-5295

2016

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RADpainter and fineRADstructure: Population Inference from RADseq Data

Molecular biology and evolution, 2018-05, Vol.35 (5), p.1284-1290

2018

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Resolved phylogenetic relationships in the Ocotea complex (Supraocotea) facilitate phylogenetic classification and studies of character evolution

American journal of botany, 2021-04, Vol.108 (4), p.664-679

2021

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A phylogenomic perspective on diversity, hybridization and evolutionary affinities in the stickleback genus Pungitius

Molecular ecology, 2019-09, Vol.28 (17), p.4046-4064

2019

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Investigating the origins and evolution of a glyphosate‐resistant weed invasion in South America

Molecular ecology, 2021-11, Vol.30 (21), p.5360-5372

2021

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Living in the city: urban environments shape the evolution of a native annual plant

Global change biology, 2017-05, Vol.23 (5), p.2082-2089

2017

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Estimating and accounting for genotyping errors in RAD‐seq experiments

Molecular ecology resources, 2020-07, Vol.20 (4), p.856-870

2020

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An island‐hopping bird reveals how founder events shape genome‐wide divergence

Molecular ecology, 2021-06, Vol.30 (11), p.2495-2510

2021

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Transitioning from microsatellites to SNP‐based microhaplotypes in genetic monitoring programmes: Lessons from paired data spanning 20 years

Molecular ecology, 2023-01, Vol.32 (2), p.316-334

2023

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A shift in the host web occupancy of dew‐drop spiders associated with genetic divergence in the Southwest Pacific

Journal of biogeography, 2024-06, Vol.51 (6), p.1049-1063

2024

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THE GENETIC ARCHITECTURE OF REPRODUCTIVE ISOLATION DURING SPECIATION-WITH-GENE-FLOW IN LAKE WHITEFISH SPECIES PAIRS ASSESSED BY RAD SEQUENCING

Evolution, 2013-09, Vol.67 (9), p.2483-2497

2013

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Vanishing refuge? Testing the forest refuge hypothesis in coastal East Africa using genome‐wide sequence data for seven amphibians

Molecular ecology, 2018-11, Vol.27 (21), p.4289-4308

2018

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Shared and distinct patterns of genetic structure in two sympatric large decapods

Journal of biogeography, 2023-07, Vol.50 (7), p.1271-1284

2023

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Phylogenomic and morphological data reveal hidden patterns of diversity in the national tree of Brazil, Paubrasilia echinata

American journal of botany, 2023-11, Vol.110 (11), p.e16241-n/a

2023

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Parallel patterns of genetic diversity and structure in circumboreal species of the Sphagnum capillifolium complex

American journal of botany, 2024-05, Vol.111 (5), p.e16348-n/a

2024

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Stacks: an analysis tool set for population genomics

Lost in parameter space: a road map for stacks

Sympatric parallel diversification of major oak clades in the Americas and the origins of Mexican species diversity

Genomic landscape of the global oak phylogeny

Genome-wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in the Lake Victoria cichlid adaptive radiation

Bioinformatic processing of RAD‐seq data dramatically impacts downstream population genetic inference

Genotyping-by-sequencing in ecological and conservation genomics

Practical considerations for plant phylogenomics

East Asian origins of European holly oaks (Quercus section Ilex Loudon) via the Tibet‐Himalaya

Genomic insights into adaptation to heterogeneous environments for the ancient relictual Circaeaster agrestis (Circaeasteraceae, Ranunculales)

Genomic variation at the tips of the adaptive radiation of Darwin's finches

RADpainter and fineRADstructure: Population Inference from RADseq Data

Resolved phylogenetic relationships in the Ocotea complex (Supraocotea) facilitate phylogenetic classification and studies of character evolution

A phylogenomic perspective on diversity, hybridization and evolutionary affinities in the stickleback genus Pungitius

Investigating the origins and evolution of a glyphosate‐resistant weed invasion in South America

Living in the city: urban environments shape the evolution of a native annual plant

Estimating and accounting for genotyping errors in RAD‐seq experiments

An island‐hopping bird reveals how founder events shape genome‐wide divergence

Transitioning from microsatellites to SNP‐based microhaplotypes in genetic monitoring programmes: Lessons from paired data spanning 20 years

A shift in the host web occupancy of dew‐drop spiders associated with genetic divergence in the Southwest Pacific

THE GENETIC ARCHITECTURE OF REPRODUCTIVE ISOLATION DURING SPECIATION-WITH-GENE-FLOW IN LAKE WHITEFISH SPECIES PAIRS ASSESSED BY RAD SEQUENCING

Vanishing refuge? Testing the forest refuge hypothesis in coastal East Africa using genome‐wide sequence data for seven amphibians

Shared and distinct patterns of genetic structure in two sympatric large decapods

Phylogenomic and morphological data reveal hidden patterns of diversity in the national tree of Brazil, Paubrasilia echinata

Parallel patterns of genetic diversity and structure in circumboreal species of the Sphagnum capillifolium complex

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