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Best practices for the visualization, mapping, and manipulation of R‐loops

The EMBO journal, 2021-02, Vol.40 (4), p.e106394-n/a

2021

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Multi-omics to characterize the functional relationships of R-loops with epigenetic modifications, RNAPII transcription and gene expression

Briefings in bioinformatics, 2022-07, Vol.23 (4)

2022

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R‐loop formation during S phase is restricted by PrimPol‐mediated repriming

The EMBO journal, 2019-02, Vol.38 (3), p.n/a

2019

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UAP56/DDX39B is a major cotranscriptional RNA-DNA helicase that unwinds harmful R loops genome-wide

Genes & development, 2020-07, Vol.34 (13-14), p.898-912

2020

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R-loop-derived cytoplasmic RNA–DNA hybrids activate an immune response

Nature (London), 2023-01, Vol.613 (7942), p.187-194

2023

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AATF/Che‐1 localizes to paraspeckles and suppresses R‐loops accumulation and interferon activation in Multiple Myeloma

The EMBO journal, 2022-11, Vol.41 (22), p.e109711-n/a

2022

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R‐loops act as regulatory switches modulating transcription of COLD‐responsive genes in rice

The New phytologist, 2024-01, Vol.241 (1), p.267-282

2024

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Topoisomerase 1 prevents replication stress at R-loop-enriched transcription termination sites

Nature communications, 2020-08, Vol.11 (1), p.3940-12, Article 3940

2020

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Hypoxia‐mediated regulation of DDX5 through decreased chromatin accessibility and post‐translational targeting restricts R‐loop accumulation

Molecular oncology, 2023-07, Vol.17 (7), p.1173-1191

2023

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The THO complex component Thp2 counteracts telomeric R-loops and telomere shortening

The EMBO journal, 2013-10, Vol.32 (21), p.2861-2871

2013

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AAV-mediated genome editing is influenced by the formation of R-loops

Molecular therapy, 2024-10

2024

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RNA transcripts stimulate homologous recombination by forming DR-loops

Nature (London), 2021-06, Vol.594 (7862), p.283-288

2021

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Abstract 2036 The Impact of Heat Stress on R-loop-associated Genomic Stress and Gene Expression Dysregulation in Alzheimer's Disease

The Journal of biological chemistry, 2024-03, Vol.300 (3), p.106590, Article 106590

2024

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BRCA2 promotes DNA‐RNA hybrid resolution by DDX5 helicase at DNA breaks to facilitate their repair

The EMBO journal, 2021-04, Vol.40 (7), p.e106018-n/a

2021

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R-loop proximity proteomics identifies a role of DDX41 in transcription-associated genomic instability

Nature communications, 2021-12, Vol.12 (1), p.7314-7314, Article 7314

2021

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Hypoxia-induced SETX links replication stress with the unfolded protein response

Nature communications, 2021-06, Vol.12 (1), p.3686-14, Article 3686

2021

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Transcription-Replication Conflict Orientation Modulates R-Loop Levels and Activates Distinct DNA Damage Responses

Cell, 2017-08, Vol.170 (4), p.774-786.e19

2017

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R‐loops mediate transcription‐associated formation of human rDNA secondary constrictions

Journal of cellular biochemistry, 2021-10, Vol.122 (10), p.1517-1533

2021

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RNase H2, mutated in Aicardi‐Goutières syndrome, resolves co-transcriptional R-loops to prevent DNA breaks and inflammation

Nature communications, 2022-05, Vol.13 (1), p.2961-2961, Article 2961

2022

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BRD4 prevents the accumulation of R-loops and protects against transcription–replication collision events and DNA damage

Nature communications, 2020-08, Vol.11 (1), p.4083-20, Article 4083

2020

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FANCD2 protects genome stability by recruiting RNA processing enzymes to resolve R‐loops during mild replication stress

The FEBS journal, 2019-01, Vol.286 (1), p.139-150

2019

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R-Loop Mediated trans Action of the APOLO Long Noncoding RNA

Molecular cell, 2020-03, Vol.77 (5), p.1055-1065.e4

2020

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The chromatin remodelling factor ATRX suppresses R‐loops in transcribed telomeric repeats

EMBO reports, 2017-06, Vol.18 (6), p.914-928

2017

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ZPR1 prevents R-loop accumulation, upregulates SMN2 expression and rescues spinal muscular atrophy

Brain (London, England : 1878), 2020-01, Vol.143 (1), p.69-93

2020

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BRCA1 binds TERRA RNA and suppresses R-Loop-based telomeric DNA damage

Nature communications, 2021-06, Vol.12 (1), p.3542-3542, Article 3542

2021

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Best practices for the visualization, mapping, and manipulation of R‐loops

Multi-omics to characterize the functional relationships of R-loops with epigenetic modifications, RNAPII transcription and gene expression

R‐loop formation during S phase is restricted by PrimPol‐mediated repriming

UAP56/DDX39B is a major cotranscriptional RNA-DNA helicase that unwinds harmful R loops genome-wide

R-loop-derived cytoplasmic RNA–DNA hybrids activate an immune response

AATF/Che‐1 localizes to paraspeckles and suppresses R‐loops accumulation and interferon activation in Multiple Myeloma

R‐loops act as regulatory switches modulating transcription of COLD‐responsive genes in rice

Topoisomerase 1 prevents replication stress at R-loop-enriched transcription termination sites

Hypoxia‐mediated regulation of DDX5 through decreased chromatin accessibility and post‐translational targeting restricts R‐loop accumulation

The THO complex component Thp2 counteracts telomeric R-loops and telomere shortening

AAV-mediated genome editing is influenced by the formation of R-loops

RNA transcripts stimulate homologous recombination by forming DR-loops

Abstract 2036 The Impact of Heat Stress on R-loop-associated Genomic Stress and Gene Expression Dysregulation in Alzheimer's Disease

BRCA2 promotes DNA‐RNA hybrid resolution by DDX5 helicase at DNA breaks to facilitate their repair

R-loop proximity proteomics identifies a role of DDX41 in transcription-associated genomic instability

Hypoxia-induced SETX links replication stress with the unfolded protein response

Transcription-Replication Conflict Orientation Modulates R-Loop Levels and Activates Distinct DNA Damage Responses

R‐loops mediate transcription‐associated formation of human rDNA secondary constrictions

RNase H2, mutated in Aicardi‐Goutières syndrome, resolves co-transcriptional R-loops to prevent DNA breaks and inflammation

BRD4 prevents the accumulation of R-loops and protects against transcription–replication collision events and DNA damage

FANCD2 protects genome stability by recruiting RNA processing enzymes to resolve R‐loops during mild replication stress

R-Loop Mediated trans Action of the APOLO Long Noncoding RNA

The chromatin remodelling factor ATRX suppresses R‐loops in transcribed telomeric repeats

ZPR1 prevents R-loop accumulation, upregulates SMN2 expression and rescues spinal muscular atrophy

BRCA1 binds TERRA RNA and suppresses R-Loop-based telomeric DNA damage

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