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Effects of Conventional and Organic Agriculture on Soil Arbuscular Mycorrhizal Fungal Community in Low-Quality Farmland

Frontiers in microbiology, 2022-06, Vol.13, p.914627-914627

2022

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High diversity and strong variation in host specificity of seed parasitic acorn weevils

Insect conservation and diversity, 2021-05, Vol.14 (3), p.367-376

2021

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Garden microbiomes of Apterostigma dentigerum and Apterostigma pilosum fungus-growing ants (Hymenoptera: Formicidae)

The Journal of Microbiology, 2019, 57(10), , pp.842-851

2019

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Distinct sensitivity of fungal freshwater guilds to water quality

Mycological progress, 2017-02, Vol.16 (2), p.155-169

2017

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Picocyanobacterial community structure and space-time dynamics in the subalpine Lake Maggiore (N. Italy)

Journal of limnology, 2012-01, Vol.71 (1), p.9-103

2012

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Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data

Methods in ecology and evolution, 2013-12, Vol.4 (12), p.1111-1119

2013

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Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring

Methods in ecology and evolution, 2012-08, Vol.3 (4), p.613-623

2012

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Metabarcoding reveals strong spatial structure and temporal turnover of zooplankton communities among marine and freshwater ports

Diversity & distributions, 2016-05, Vol.22 (5), p.493-504

2016

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Wood decomposition is more strongly controlled by temperature than by tree species and decomposer diversity in highly species rich subtropical forests

Oikos, 2019-05, Vol.128 (5), p.701-715

2019

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Phytovirome Analysis of Wild Plant Populations: Comparison of Double-Stranded RNA and Virion-Associated Nucleic Acid Metagenomic Approaches

Journal of virology, 2019-12, Vol.94 (1), p.e01462-9

2019

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Analyses of soil bacterial community diversity in naturally and conventionally farmed apple orchards using 16S rRNA gene sequencing

Applied soil ecology : a section of Agriculture, ecosystems & environment, 2019-09, Vol.141, p.26-29

2019

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A comparison of bioinformatic approaches for 16S rRNA gene profiling of food bacterial microbiota

International journal of food microbiology, 2018-01, Vol.265, p.9-17

2018

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Soil bacterial diversity related to soil compaction and aggregates sizes in potato cropping systems

Applied soil ecology : a section of Agriculture, ecosystems & environment, 2021-12, Vol.168, p.104147, Article 104147

2021

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The effect of sheep grazing abandonment on soil bacterial communities in productive mountain grasslands

The Science of the total environment, 2022-12, Vol.851, p.158398-158398, Article 158398

2022

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Accuracy of microbial community diversity estimated by closed- and open-reference OTUs

PeerJ (San Francisco, CA), 2017-10, Vol.5, p.e3889-e3889, Article e3889

Edgar, Robert C

2017

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The hidden layers of microbial community structure: extracting the concealed diversity dimensions from our sequencing data

FEMS microbiology letters, 2020-06, Vol.367 (11), p.1

2020

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Assessing ecological status in karstic lakes through the integration of phytoplankton functional groups, morphological approach and environmental DNA metabarcoding

Ecological indicators, 2021-11, Vol.131, p.108166, Article 108166

2021

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De novo clustering methods outperform reference-based methods for assigning 16S rRNA gene sequences to operational taxonomic units

PeerJ (San Francisco, CA), 2015-12, Vol.3, p.e1487-e1487, Article e1487

2015

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No apparent effect of invasive alien goldenrod on soil microbial communities or soil fauna feeding activity

Acta oecologica (Montrouge), 2020-11, Vol.109, p.103669, Article 103669

2020

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Simple approaches for evaluation of OTU quality based on dissimilarity arrays

Metabarcoding and Metagenomics, 2024-03, Vol.8, p.233-44

2024

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Genetic barcoding of dark‐spored myxomycetes (Amoebozoa)—Identification, evaluation and application of a sequence similarity threshold for species differentiation in NGS studies

Molecular ecology resources, 2018-03, Vol.18 (2), p.306-318

2018

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Latent Dirichlet Allocation reveals spatial and taxonomic structure in a DNA‐based census of soil biodiversity from a tropical forest

Molecular ecology resources, 2020-03, Vol.20 (2), p.371-386

2020

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Do we similarly assess diversity with microscopy and high-throughput sequencing? Case of microalgae in lakes

Organisms diversity & evolution, 2018-03, Vol.18 (1), p.51-62

2018

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Towards a unified medical microbiome ecology of the OMU for metagenomes and the OTU for microbes

BMC bioinformatics, 2024-03, Vol.25 (1), p.137-137, Article 137

Ma, Zhanshan Sam

2024

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Analysis of 16S rRNA Gene Amplicon Sequences Using the QIIME Software Package

Methods in molecular biology (Clifton, N.J.), 2017, Vol.1537, p.153

2017

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Effects of Conventional and Organic Agriculture on Soil Arbuscular Mycorrhizal Fungal Community in Low-Quality Farmland

High diversity and strong variation in host specificity of seed parasitic acorn weevils

Garden microbiomes of Apterostigma dentigerum and Apterostigma pilosum fungus-growing ants (Hymenoptera: Formicidae)

Distinct sensitivity of fungal freshwater guilds to water quality

Picocyanobacterial community structure and space-time dynamics in the subalpine Lake Maggiore (N. Italy)

Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data

Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring

Metabarcoding reveals strong spatial structure and temporal turnover of zooplankton communities among marine and freshwater ports

Wood decomposition is more strongly controlled by temperature than by tree species and decomposer diversity in highly species rich subtropical forests

Phytovirome Analysis of Wild Plant Populations: Comparison of Double-Stranded RNA and Virion-Associated Nucleic Acid Metagenomic Approaches

Analyses of soil bacterial community diversity in naturally and conventionally farmed apple orchards using 16S rRNA gene sequencing

A comparison of bioinformatic approaches for 16S rRNA gene profiling of food bacterial microbiota

Soil bacterial diversity related to soil compaction and aggregates sizes in potato cropping systems

The effect of sheep grazing abandonment on soil bacterial communities in productive mountain grasslands

Accuracy of microbial community diversity estimated by closed- and open-reference OTUs

The hidden layers of microbial community structure: extracting the concealed diversity dimensions from our sequencing data

Assessing ecological status in karstic lakes through the integration of phytoplankton functional groups, morphological approach and environmental DNA metabarcoding

De novo clustering methods outperform reference-based methods for assigning 16S rRNA gene sequences to operational taxonomic units

No apparent effect of invasive alien goldenrod on soil microbial communities or soil fauna feeding activity

Simple approaches for evaluation of OTU quality based on dissimilarity arrays

Genetic barcoding of dark‐spored myxomycetes (Amoebozoa)—Identification, evaluation and application of a sequence similarity threshold for species differentiation in NGS studies

Latent Dirichlet Allocation reveals spatial and taxonomic structure in a DNA‐based census of soil biodiversity from a tropical forest

Do we similarly assess diversity with microscopy and high-throughput sequencing? Case of microalgae in lakes

Towards a unified medical microbiome ecology of the OMU for metagenomes and the OTU for microbes

Analysis of 16S rRNA Gene Amplicon Sequences Using the QIIME Software Package

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