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Peptide binding predictions for HLA DR, DP and DQ molecules

BMC bioinformatics, 2010-11, Vol.11 (1), p.568-568, Article 568

2010

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Proinsulin-specific, HLA-DQ8, and HLA-DQ8-transdimer-restricted CD4+ T cells infiltrate islets in type 1 diabetes

Diabetes (New York, N.Y.), 2015-01, Vol.64 (1), p.172-182

2015

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NetMHCIIpan-3.0, a common pan-specific MHC class II prediction method including all three human MHC class II isotypes, HLA-DR, HLA-DP and HLA-DQ

Immunogenetics (New York), 2013-10, Vol.65 (10), p.711-724

2013

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HLA-DP in unrelated hematopoietic cell transplantation revisited: challenges and opportunities

Blood, 2017-08, Vol.130 (9), p.1089-1096

2017

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Class II HLA Epitope Matching—A Strategy to Minimize De Novo Donor‐Specific Antibody Development and Improve Outcomes

American journal of transplantation, 2013-12, Vol.13 (12), p.3114-3122

2013

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First report on the antibody verification of HLA-DR, HLA-DQ and HLA-DP epitopes recorded in the HLA Epitope Registry

Human immunology, 2014-11, Vol.75 (11), p.1097-1103

2014

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A Novel Family of Human Leukocyte Antigen Class II Receptors May Have Its Origin in Archaic Human Species

The Journal of biological chemistry, 2014-01, Vol.289 (2), p.639-653

2014

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HLA mismatch combinations associated with decreased risk of relapse: implications for the molecular mechanism

Blood, 2009-03, Vol.113 (12), p.2851-2858

2009

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MHC2AffyPred: A machine‐learning approach to estimate affinity of MHC class II peptides based on structural interaction fingerprints

Proteins, structure, function, and bioinformatics, 2023-02, Vol.91 (2), p.277-289

2023

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Accurate prediction of HLA class II antigen presentation across all loci using tailored data acquisition and refined machine learning

Science advances, 2023-11, Vol.9 (47), p.eadj6367-eadj6367

2023

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Characterizing the binding motifs of 11 common human HLA‐DP and HLA‐DQ molecules using NNAlign

Immunology, 2012-07, Vol.136 (3), p.306-311

2012

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Crystal structure of HLA-DP2 and implications for chronic beryllium disease

Proceedings of the National Academy of Sciences - PNAS, 2010-04, Vol.107 (16), p.7425-7430

2010

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Proteochemometrics-Based Prediction of Peptide Binding to HLA-DP Proteins

Journal of chemical information and modeling, 2018-02, Vol.58 (2), p.297-304

2018

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HLAMatchmaker: A Molecularly Based Algorithm for Histocompatibility Determination. V. Eplet Matching for HLA-DR, HLA-DQ, and HLA-DP

Human immunology, 2007-01, Vol.68 (1), p.12-25

2007

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Peptides identified on monocyte-derived dendritic cells: a marker for clinical immunogenicity to FVIII products

Blood advances, 2019-05, Vol.3 (9), p.1429-1440

2019

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Peptide binding prediction for the human class II MHC allele HLA-DP2: a molecular docking approach

BMC structural biology, 2011-07, Vol.11 (1), p.32-32, Article 32

2011

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Role of HLA-DP in the Presentation of Epitopes from the Truncated Bacterial PE38 Immunotoxin

The AAPS journal, 2017-01, Vol.19 (1), p.117-129

2017

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The bioinorganic chemistry and associated immunology of chronic beryllium disease

Chemical communications (Cambridge, England), 2008-01 (25), p.2837-2847

2008

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Stoichiometry of HLA class II-invariant chain oligomers

PloS one, 2011-02, Vol.6 (2), p.e17257-e17257

2011

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MultiRTA: a simple yet reliable method for predicting peptide binding affinities for multiple class II MHC allotypes

BMC bioinformatics, 2010-09, Vol.11 (1), p.482-482, Article 482

2010

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HLA-DP4, the Most Frequent HLA II Molecule, Defines a New Supertype of Peptide-Binding Specificity

The Journal of immunology (1950), 2002-12, Vol.169 (12), p.6928-6934

2002

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Retransplant candidates have donor-specific antibodies that react with structurally defined HLA-DR,DQ,DP epitopes

Transplant immunology, 2008-02, Vol.18 (4), p.352-360

2008

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Beryllium Presentation to CD4+T Cells Underlies Disease-Susceptibility HLA-DP Alleles in Chronic Beryllium Disease

Proceedings of the National Academy of Sciences - PNAS, 2000-11, Vol.97 (23), p.12717-12722

2000

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Towards universal structure-based prediction of class II MHC epitopes for diverse allotypes

PloS one, 2010-12, Vol.5 (12), p.e14383

2010

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Peptide binding predictions for HLA DR, DP and DQ molecules

Proinsulin-specific, HLA-DQ8, and HLA-DQ8-transdimer-restricted CD4+ T cells infiltrate islets in type 1 diabetes

NetMHCIIpan-3.0, a common pan-specific MHC class II prediction method including all three human MHC class II isotypes, HLA-DR, HLA-DP and HLA-DQ

HLA-DP in unrelated hematopoietic cell transplantation revisited: challenges and opportunities

Class II HLA Epitope Matching—A Strategy to Minimize De Novo Donor‐Specific Antibody Development and Improve Outcomes

First report on the antibody verification of HLA-DR, HLA-DQ and HLA-DP epitopes recorded in the HLA Epitope Registry

A Novel Family of Human Leukocyte Antigen Class II Receptors May Have Its Origin in Archaic Human Species

HLA mismatch combinations associated with decreased risk of relapse: implications for the molecular mechanism

MHC2AffyPred: A machine‐learning approach to estimate affinity of MHC class II peptides based on structural interaction fingerprints

Impact of HLA class I and class II high-resolution matching on outcomes of unrelated donor bone marrow transplantation: HLA-C mismatching is associated with a strong adverse effect on transplantation outcome

Accurate prediction of HLA class II antigen presentation across all loci using tailored data acquisition and refined machine learning

Characterizing the binding motifs of 11 common human HLA‐DP and HLA‐DQ molecules using NNAlign

Crystal structure of HLA-DP2 and implications for chronic beryllium disease

Proteochemometrics-Based Prediction of Peptide Binding to HLA-DP Proteins

HLAMatchmaker: A Molecularly Based Algorithm for Histocompatibility Determination. V. Eplet Matching for HLA-DR, HLA-DQ, and HLA-DP

Peptides identified on monocyte-derived dendritic cells: a marker for clinical immunogenicity to FVIII products

Peptide binding prediction for the human class II MHC allele HLA-DP2: a molecular docking approach

Role of HLA-DP in the Presentation of Epitopes from the Truncated Bacterial PE38 Immunotoxin

The bioinorganic chemistry and associated immunology of chronic beryllium disease

Stoichiometry of HLA class II-invariant chain oligomers

MultiRTA: a simple yet reliable method for predicting peptide binding affinities for multiple class II MHC allotypes

HLA-DP4, the Most Frequent HLA II Molecule, Defines a New Supertype of Peptide-Binding Specificity

Retransplant candidates have donor-specific antibodies that react with structurally defined HLA-DR,DQ,DP epitopes

Beryllium Presentation to CD4+T Cells Underlies Disease-Susceptibility HLA-DP Alleles in Chronic Beryllium Disease

Towards universal structure-based prediction of class II MHC epitopes for diverse allotypes

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