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Genomics and Machine Learning

Genomics at the Nexus of AI, Computer Vision, and Machine Learning, 2025, p.437-457

2025

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Learning Enhancer-Gene associations from Bulk Transcriptomic and Epigenetic Sequencing Data with STITCHIT

Methods in molecular biology (Clifton, N.J.), 2025, Vol.2856, p.341

2025

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Predicting discharge coefficient of triangular side orifice using ANN and GEP models

Water Science, 2024-12, Vol.38 (1), p.1-20

2024

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Enhancing metastatic colorectal cancer prediction through advanced feature selection and machine learning techniques

International immunopharmacology, 2024-12, Vol.142 (Pt A), p.113033, Article 113033

2024

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Identify liver fibrosis associated hub genes using integrated bioinformatics analysis

Gene reports, 2024-12, Vol.37, p.102001, Article 102001

2024

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Application of an alchemical free energy method for the prediction of thermostable DuraPETase variants

Applied microbiology and biotechnology, 2024-12, Vol.108 (1), p.305-305, Article 305

2024

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Computational analysis of non-synonymous SNPs in the human LCN2 gene

The Egyptian journal of medical human genetics, 2024-12, Vol.25 (1), p.94

2024

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Quantitative evaluation and genome-wide association studies of chrysanthemum flower color

Scientia horticulturae, 2024-12, Vol.338, p.113561, Article 113561

2024

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RNA-RBP interactions recognition using multi-label learning and feature attention allocation

Journal of cloud computing : advances, systems and applications, 2024-12, Vol.13 (1), p.54-13, Article 54

2024

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Genetic association study of TERT gene variants with chronic kidney disease susceptibility in the Chinese population

Renal failure, 2024-12, Vol.46 (1), p.2300725-2300725

2024

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Auxotrophy-based curation improves the consensus genome-scale metabolic model of yeast

Synthetic and systems biotechnology, 2024-12, Vol.9 (4), p.861-870

2024

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Identification of MYB gene family in medicinal tea tree Melaleuca alternifolia (Maiden and Betche) cheel and analysis of members regulating terpene biosynthesis

Molecular biology reports, 2024-12, Vol.51 (1), p.70-70, Article 70

2024

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Immunosuppressive MDSC and Treg signatures predict prognosis and therapeutic response in glioma

International immunopharmacology, 2024-11, Vol.141, p.112922, Article 112922

2024

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Mendelian randomization of individual sleep traits associated with major depressive disorder

Journal of affective disorders, 2024-11, Vol.365, p.105-111

2024

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Focusing on non-responders to infliximab with ulcerative colitis, what can we do first and next?

International immunopharmacology, 2024-11, Vol.141, p.112943, Article 112943

2024

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ARGENT: Multi-task learning model for predicting autism-related genes and drug targets using heterogeneous graph convolutional network

Future generation computer systems, 2024-11, Vol.160, p.942-950

2024

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A novel high‐risk model identified by epithelial–mesenchymal transition predicts prognosis and radioresistance in rectal cancer

Molecular carcinogenesis, 2024-11, Vol.63 (11), p.2119-2132

2024

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Mechanics guided data-driven model for seismic shear strength of exterior beam-column joints

Structures (Oxford), 2024-11, Vol.69, p.107320, Article 107320

2024

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Dual mechanism of membrane covering on GHG and NH3 mitigation during industrial-scale experiment on dairy manure composting: Inhibiting formation and blocking emissions

Journal of environmental management, 2024-11, Vol.370, p.122585, Article 122585

2024

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Construction and validation of a bioinformatics‑based screen for cuproptosis‑related genes and risk model for Alzheimer's disease

Molecular medicine reports, 2024-11, Vol.30 (5), Article 194

2024

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Vitamin D-Regulated miR-589-3p in Patients with Cervical Cancer Predicts Patient Prognosis and is Involved in Tumor Progression

Nutrition and cancer, 2024-10, Vol.76 (9), p.840-848

2024

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Mechanistic insight into assimilation capture: Implication for high-efficiency nitrogen removal from mature landfill leachate

Chemical engineering journal (Lausanne, Switzerland : 1996), 2024-10, Vol.498, p.155395, Article 155395

2024

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TransCDR: a deep learning model for enhancing the generalizability of drug activity prediction through transfer learning and multimodal data fusion

BMC biology, 2024-10, Vol.22 (1), p.227

2024

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Prediction of homologous recombination deficiency from routine histology with attention-based multiple instance learning in nine different tumor types

BMC biology, 2024-10, Vol.22 (1), p.225, Article 225

2024

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Reducing herbivory in mixed planting by genomic prediction of neighbor effects in the field

Nature communications, 2024-10, Vol.15 (1), p.8467, Article 8467

2024

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Genomics and Machine Learning

Learning Enhancer-Gene associations from Bulk Transcriptomic and Epigenetic Sequencing Data with STITCHIT

Predicting discharge coefficient of triangular side orifice using ANN and GEP models

Enhancing metastatic colorectal cancer prediction through advanced feature selection and machine learning techniques

Identify liver fibrosis associated hub genes using integrated bioinformatics analysis

Application of an alchemical free energy method for the prediction of thermostable DuraPETase variants

Computational analysis of non-synonymous SNPs in the human LCN2 gene

Quantitative evaluation and genome-wide association studies of chrysanthemum flower color

RNA-RBP interactions recognition using multi-label learning and feature attention allocation

Genetic association study of TERT gene variants with chronic kidney disease susceptibility in the Chinese population

Auxotrophy-based curation improves the consensus genome-scale metabolic model of yeast

Identification of MYB gene family in medicinal tea tree Melaleuca alternifolia (Maiden and Betche) cheel and analysis of members regulating terpene biosynthesis

Immunosuppressive MDSC and Treg signatures predict prognosis and therapeutic response in glioma

Mendelian randomization of individual sleep traits associated with major depressive disorder

Focusing on non-responders to infliximab with ulcerative colitis, what can we do first and next?

ARGENT: Multi-task learning model for predicting autism-related genes and drug targets using heterogeneous graph convolutional network

A novel high‐risk model identified by epithelial–mesenchymal transition predicts prognosis and radioresistance in rectal cancer

Mechanics guided data-driven model for seismic shear strength of exterior beam-column joints

Dual mechanism of membrane covering on GHG and NH3 mitigation during industrial-scale experiment on dairy manure composting: Inhibiting formation and blocking emissions

Construction and validation of a bioinformatics‑based screen for cuproptosis‑related genes and risk model for Alzheimer's disease

Vitamin D-Regulated miR-589-3p in Patients with Cervical Cancer Predicts Patient Prognosis and is Involved in Tumor Progression

Mechanistic insight into assimilation capture: Implication for high-efficiency nitrogen removal from mature landfill leachate

TransCDR: a deep learning model for enhancing the generalizability of drug activity prediction through transfer learning and multimodal data fusion

Prediction of homologous recombination deficiency from routine histology with attention-based multiple instance learning in nine different tumor types

Reducing herbivory in mixed planting by genomic prediction of neighbor effects in the field

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