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Genomic signal processing

1, 2007

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Genomic Control Process: Development and Evolution

1, 2015

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Computational methods for Gene Regulatory Networks reconstruction and analysis: A review

Artificial intelligence in medicine, 2019-04, Vol.95, p.133-145

2019

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Evolutionary Computation in Gene Regulatory Network Research

Hitoshi Iba, Nasimul Noman

1, 2016

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The Polygenic and Monogenic Basis of Blood Traits and Diseases

Cell, 2020-09, Vol.182 (5), p.1214-1231.e11

2020

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Integrated protein function prediction by mining function associations, sequences, and protein–protein and gene–gene interaction networks

Methods (San Diego, Calif.), 2016-01, Vol.93, p.84-91

2016

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Network‐based approaches for understanding gene regulation and function in plants

The Plant journal : for cell and molecular biology, 2020-10, Vol.104 (2), p.302-317

2020

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Gene Regulatory Networks

Peter, Isabelle S

1, 2020

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Inferring Causal Gene Regulatory Networks from Coupled Single-Cell Expression Dynamics Using Scribe

Cell systems, 2020-03, Vol.10 (3), p.265-274.e11

2020

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Synthetic Gene Network: Modeling, Analysis, and Robust Design Methods

1, 2014

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A gene regulatory network for root hair development

Journal of plant research, 2019-05, Vol.132 (3), p.301-309

2019

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Dynamic Antagonism between Phytochromes and PIF Family Basic Helix-Loop-Helix Factors Induces Selective Reciprocal Responses to Light and Shade in a Rapidly Responsive Transcriptional Network in Arabidopsis

The Plant cell, 2012-04, Vol.24 (4), p.1398-1419

2012

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Computational inference of gene regulatory networks: Approaches, limitations and opportunities

Biochimica et biophysica acta. Gene regulatory mechanisms, 2017-01, Vol.1860 (1), p.41-52

2017

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Interplay between gene expression noise and regulatory network architecture

Trends in genetics, 2012-05, Vol.28 (5), p.221-232

2012

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ATTED-II v11: A Plant Gene Coexpression Database Using a Sample Balancing Technique by Subagging of Principal Components

Plant and cell physiology, 2022-06, Vol.63 (6), p.869-881

2022

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Curcumin enhances radiosensitization of nasopharyngeal carcinoma by regulating circRNA network

Molecular carcinogenesis, 2020-02, Vol.59 (2), p.202-214

2020

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LncIRS1 controls muscle atrophy via sponging miR‐15 family to activate IGF1‐PI3K/AKT pathway

Journal of cachexia, sarcopenia and muscle, 2019-04, Vol.10 (2), p.391-410

2019

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Gene Essentiality Profiling Reveals Gene Networks and Synthetic Lethal Interactions with Oncogenic Ras

Cell, 2017-02, Vol.168 (5), p.890-903.e15

2017

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Leveraging gene correlations in single cell transcriptomic data

BMC bioinformatics, 2024-09, Vol.25 (1), p.305-43, Article 305

2024

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A phosphate starvation response-centered network regulates mycorrhizal symbiosis

Cell, 2021-10, Vol.184 (22), p.5527-5540.e18

2021

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Direct lineage reprogramming via pioneer factors; a detour through developmental gene regulatory networks

Development (Cambridge), 2016-08, Vol.143 (15), p.2696-2705

Morris, Samantha A

2016

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Network for Activation of Human Endothelial Cells by Oxidized Phospholipids: A Critical Role of Heme Oxygenase 1

Circulation research, 2011-08, Vol.109 (5), p.e27-e41

2011

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Reprogramming cell fates: reconciling rarity with robustness

BioEssays, 2009-05, Vol.31 (5), p.546-560

Huang, Sui

2009

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k- Strong Inference Algorithm: A Hybrid Information Theory Based Gene Network Inference Algorithm

Molecular biotechnology, 2023-11

Cingiz, Mustafa Özgür

2023

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Pax3 and Zic1 trigger the early neural crest gene regulatory network by the direct activation of multiple key neural crest specifiers

Developmental biology, 2014-02, Vol.386 (2), p.461-472

2014

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Genomic signal processing

Genomic Control Process: Development and Evolution

Computational methods for Gene Regulatory Networks reconstruction and analysis: A review

Evolutionary Computation in Gene Regulatory Network Research

The Polygenic and Monogenic Basis of Blood Traits and Diseases

Integrated protein function prediction by mining function associations, sequences, and protein–protein and gene–gene interaction networks

Network‐based approaches for understanding gene regulation and function in plants

Gene Regulatory Networks

Inferring Causal Gene Regulatory Networks from Coupled Single-Cell Expression Dynamics Using Scribe

Synthetic Gene Network: Modeling, Analysis, and Robust Design Methods

A gene regulatory network for root hair development

Dynamic Antagonism between Phytochromes and PIF Family Basic Helix-Loop-Helix Factors Induces Selective Reciprocal Responses to Light and Shade in a Rapidly Responsive Transcriptional Network in Arabidopsis

Computational inference of gene regulatory networks: Approaches, limitations and opportunities

Interplay between gene expression noise and regulatory network architecture

ATTED-II v11: A Plant Gene Coexpression Database Using a Sample Balancing Technique by Subagging of Principal Components

Curcumin enhances radiosensitization of nasopharyngeal carcinoma by regulating circRNA network

LncIRS1 controls muscle atrophy via sponging miR‐15 family to activate IGF1‐PI3K/AKT pathway

Gene Essentiality Profiling Reveals Gene Networks and Synthetic Lethal Interactions with Oncogenic Ras

Leveraging gene correlations in single cell transcriptomic data

A phosphate starvation response-centered network regulates mycorrhizal symbiosis

Direct lineage reprogramming via pioneer factors; a detour through developmental gene regulatory networks

Network for Activation of Human Endothelial Cells by Oxidized Phospholipids: A Critical Role of Heme Oxygenase 1

Reprogramming cell fates: reconciling rarity with robustness

k- Strong Inference Algorithm: A Hybrid Information Theory Based Gene Network Inference Algorithm

Pax3 and Zic1 trigger the early neural crest gene regulatory network by the direct activation of multiple key neural crest specifiers

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