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The Gene Ontology Resource: 20 years and still GOing strong

Nucleic acids research, 2019-01, Vol.47 (D1), p.D330-D338

The Gene Ontology Consortium

2019

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The PSIPRED Protein Analysis Workbench: 20 years on

Nucleic acids research, 2019-07, Vol.47 (W1), p.W402-W407

2019

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Transcriptional and Spatial Resolution of Cell Types in the Mammalian Habenula

Neuron (Cambridge, Mass.), 2020-06, Vol.106 (5), p.743-758.e5

2020

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Identification of hub genes and construction of transcriptional regulatory network for the progression of colon adenocarcinoma hub genes and TF regulatory network of colon adenocarcinoma

Journal of cellular physiology, 2020-03, Vol.235 (3), p.2037-2048

2020

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Gene Ontology representation for transcription factor functions

Biochimica et biophysica acta. Gene regulatory mechanisms, 2021-11, Vol.1864 (11-12), p.194752-194752, Article 194752

2021

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Qualitative and Quantitative Shotgun Proteomics Data Analysis from Data-Dependent Acquisition Mass Spectrometry

Methods in molecular biology (Clifton, N.J.), 2021, Vol.2259, p.297

Meyer, Jesse G

2021

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NaviGO: interactive tool for visualization and functional similarity and coherence analysis with gene ontology

BMC bioinformatics, 2017-03, Vol.18 (1), p.177-177, Article 177

2017

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Primer on the Gene Ontology

Methods in molecular biology (Clifton, N.J.), 2017, Vol.1446, p.25

2017

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GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions

BMC bioinformatics, 2020-04, Vol.21 (1), p.139-139, Article 139

2020

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Gene Ontology semantic similarity tools: survey on features and challenges for biological knowledge discovery

Briefings in bioinformatics, 2017-09, Vol.18 (5), p.886-901

2017

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Identification of dysregulated miRNAs in triple negative breast cancer: A meta‐analysis approach

Journal of cellular physiology, 2019-07, Vol.234 (7), p.11768-11779

2019

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Gene expression profiles and pathway enrichment analysis to identification of differentially expressed gene and signaling pathways in epithelial ovarian cancer based on high-throughput RNA-seq data

Genomics (San Diego, Calif.), 2022-01, Vol.114 (1), p.161-170

2022

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Global insights into high temperature and drought stress regulated genes by RNA-Seq in economically important oilseed crop Brassica juncea

BMC plant biology, 2015-01, Vol.15 (1), p.9-9, Article 9

2015

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Zinc oxide nanoparticle exposure triggers different gene expression patterns in maize shoots and roots

Environmental pollution (1987), 2017-10, Vol.229, p.479-488

2017

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Novel biomarkers identified by weighted gene co-expression network analysis for atherosclerosis

Herz, 2024-06, Vol.49 (3), p.198-209

2024

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Identification of compound–protein interactions through the analysis of gene ontology, KEGG enrichment for proteins and molecular fragments of compounds

Molecular genetics and genomics : MGG, 2016-12, Vol.291 (6), p.2065-2079

2016

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The Unique Features of Proteins Depicting the Chicken Amniotic Fluid

Molecular & cellular proteomics, 2019-03, Vol.18 (Suppl 1), p.S174-S190

2019

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Graph embeddings on gene ontology annotations for protein-protein interaction prediction

BMC bioinformatics, 2020-12, Vol.21 (Suppl 16), p.560-17, Article 560

2020

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Improving automatic GO annotation with semantic similarity

BMC bioinformatics, 2022-12, Vol.23 (Suppl 2), p.433-433, Article 433

2022

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Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO)

PLoS computational biology, 2021-10, Vol.17 (10), p.e1009463

2021

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Bioinformatics analysis of ferroptosis in spinal cord injury

Neural regeneration research, 2023-03, Vol.18 (3), p.626-633

2023

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Machine learning with the TCGA-HNSC dataset: improving usability by addressing inconsistency, sparsity, and high-dimensionality

BMC bioinformatics, 2019-06, Vol.20 (1), p.339-9, Article 339

2019

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MicroRNA Signature in an In Vitro Keratinocyte Model of Diabetic Wound Healing

International journal of molecular sciences, 2024-09, Vol.25 (18), p.10125

2024

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Comparative Transcriptome and Expression Profiling of Resistant and Susceptible Banana Cultivars during Infection by Fusarium oxysporum

International journal of molecular sciences, 2021-03, Vol.22 (6), p.3002

2021

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Leveraging class hierarchy for detecting missing annotations on hierarchical multi-label classification

Computers in biology and medicine, 2023-01, Vol.152, p.106423-106423, Article 106423

2023

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The Gene Ontology Resource: 20 years and still GOing strong

The PSIPRED Protein Analysis Workbench: 20 years on

Transcriptional and Spatial Resolution of Cell Types in the Mammalian Habenula

Identification of hub genes and construction of transcriptional regulatory network for the progression of colon adenocarcinoma hub genes and TF regulatory network of colon adenocarcinoma

Gene Ontology representation for transcription factor functions

Qualitative and Quantitative Shotgun Proteomics Data Analysis from Data-Dependent Acquisition Mass Spectrometry

NaviGO: interactive tool for visualization and functional similarity and coherence analysis with gene ontology

Primer on the Gene Ontology

GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions

Gene Ontology semantic similarity tools: survey on features and challenges for biological knowledge discovery

Identification of dysregulated miRNAs in triple negative breast cancer: A meta‐analysis approach

Gene expression profiles and pathway enrichment analysis to identification of differentially expressed gene and signaling pathways in epithelial ovarian cancer based on high-throughput RNA-seq data

Global insights into high temperature and drought stress regulated genes by RNA-Seq in economically important oilseed crop Brassica juncea

Zinc oxide nanoparticle exposure triggers different gene expression patterns in maize shoots and roots

Novel biomarkers identified by weighted gene co-expression network analysis for atherosclerosis

Identification of compound–protein interactions through the analysis of gene ontology, KEGG enrichment for proteins and molecular fragments of compounds

The Unique Features of Proteins Depicting the Chicken Amniotic Fluid

Graph embeddings on gene ontology annotations for protein-protein interaction prediction

Improving automatic GO annotation with semantic similarity

Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO)

Bioinformatics analysis of ferroptosis in spinal cord injury

Machine learning with the TCGA-HNSC dataset: improving usability by addressing inconsistency, sparsity, and high-dimensionality

MicroRNA Signature in an In Vitro Keratinocyte Model of Diabetic Wound Healing

Comparative Transcriptome and Expression Profiling of Resistant and Susceptible Banana Cultivars during Infection by Fusarium oxysporum

Leveraging class hierarchy for detecting missing annotations on hierarchical multi-label classification

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