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Robustness of differential gene expression analysis of RNA-seq

Computational and structural biotechnology journal, 2021-01, Vol.19, p.3470-3481

2021

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Peripheral nerve fibroblasts secrete neurotrophic factors to promote axon growth of motoneurons

Neural regeneration research, 2022-08, Vol.17 (8), p.1833-1840

2022

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Identification of Hub Genes Associated With Development of Head and Neck Squamous Cell Carcinoma by Integrated Bioinformatics Analysis

Frontiers in oncology, 2020-05, Vol.10, p.681-681

2020

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Comparative Transcriptome Analysis Revealed Genes Commonly Responsive to Varied Nitrate Stress in Leaves of Tibetan Hulless Barley

Frontiers in plant science, 2016-07, Vol.7, p.1067-1067

2016

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Identification of Hub Genes Associated with Progression and Prognosis of Bladder Cancer by Integrated Bioinformatics Analysis

Archivos españoles de urología, 2022-11, Vol.75 (9), p.779-790

2022

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Identification of Hub Genes Associated With Tuberculous Pleurisy by Integrated Bioinformatics Analysis

Frontiers in genetics, 2021-12, Vol.12, p.730491-730491

2021

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A benchmark of batch-effect correction methods for single-cell RNA sequencing data

Genome Biology, 2020-01, Vol.21 (1), p.12-12, Article 12

2020

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cDNA microarray analysis in multiple sclerosis lesions: detection of genes associated with disease activity

Brain (London, England : 1878), 2003-05, Vol.126 (5), p.1048-1057

2003

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iDEP: an integrated web application for differential expression and pathway analysis of RNA-Seq data

BMC bioinformatics, 2018-12, Vol.19 (1), p.534-24, Article 534

2018

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Copy number variation is highly correlated with differential gene expression: a pan-cancer study

BMC medical genetics, 2019-11, Vol.20 (1), p.175-175, Article 175

2019

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Lisa: inferring transcriptional regulators through integrative modeling of public chromatin accessibility and ChIP-seq data

Genome Biology, 2020-02, Vol.21 (1), p.32-32, Article 32

2020

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Comparative analysis of differential gene expression analysis tools for single-cell RNA sequencing data

BMC bioinformatics, 2019-01, Vol.20 (1), p.40-40, Article 40

2019

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Analysis of RNA-Seq Data Using TopHat and Cufflinks

Methods in molecular biology (Clifton, N.J.), 2016-01, Vol.1374, p.339

2016

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Transcriptome analysis expands underlying mechanisms of quorum sensing mediating heterotrophic nitrification-aerobic denitrification process at low temperature

Bioresource technology, 2024-12, Vol.414, p.131581, Article 131581

2024

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Relationships between differential gene expression and heterosis in cotton hybrids developed from the foundation parent CRI-12 and its pedigree-derived lines

Plant science (Limerick), 2011-02, Vol.180 (2), p.221-227

2011

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Best practices on the differential expression analysis of multi-species RNA-seq

Genome Biology, 2021-04, Vol.22 (1), p.121-23, Article 121

2021

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Interpretation of differential gene expression results of RNA-seq data: review and integration

Briefings in bioinformatics, 2019-11, Vol.20 (6), p.2044-2054

2019

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Gene expression–based molecular scoring of pancreas transplant rejection for a quantitative assessment of rejection severity and resistance to treatment

American journal of transplantation, 2024-09

2024

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Identification of Differentially Expressed Gene Using Robust Singular Value Decomposition

Current bioinformatics, 2016-07, Vol.11 (3), p.366-374

2016

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Identification of immune-associated genes involved in latent Mycobacterium marinum infection

Microbes and infection, 2024-08, p.105407, Article 105407

2024

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The use of high-throughput sequencing to investigate the diversity of defense protein genes of cucumber inoculated with Cucumber green mottle mosaic virus

Acta horticulturae, 2021-10 (1324), p.335-340

2021

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Discrete distributional differential expression (D3E)--a tool for gene expression analysis of single-cell RNA-seq data

BMC bioinformatics, 2016-02, Vol.17 (86), p.110-110, Article 110

2016

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CancerOmicsNet: a multi-omics network-based approach to anti-cancer drug profiling

Oncotarget, 2022, Vol.13 (1), p.695-706

2022

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Microbes & neurodevelopment – Absence of microbiota during early life increases activity-related transcriptional pathways in the amygdala

Brain, behavior, and immunity, 2015-11, Vol.50, p.209-220

2015

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Robustness of differential gene expression analysis of RNA-seq

Peripheral nerve fibroblasts secrete neurotrophic factors to promote axon growth of motoneurons

Identification of Hub Genes Associated With Development of Head and Neck Squamous Cell Carcinoma by Integrated Bioinformatics Analysis

Comparative Transcriptome Analysis Revealed Genes Commonly Responsive to Varied Nitrate Stress in Leaves of Tibetan Hulless Barley

Identification of Hub Genes Associated with Progression and Prognosis of Bladder Cancer by Integrated Bioinformatics Analysis

Identification of Hub Genes Associated With Tuberculous Pleurisy by Integrated Bioinformatics Analysis

A benchmark of batch-effect correction methods for single-cell RNA sequencing data

cDNA microarray analysis in multiple sclerosis lesions: detection of genes associated with disease activity

iDEP: an integrated web application for differential expression and pathway analysis of RNA-Seq data

Copy number variation is highly correlated with differential gene expression: a pan-cancer study

Lisa: inferring transcriptional regulators through integrative modeling of public chromatin accessibility and ChIP-seq data

Comparative analysis of differential gene expression analysis tools for single-cell RNA sequencing data

Analysis of RNA-Seq Data Using TopHat and Cufflinks

Transcriptome analysis expands underlying mechanisms of quorum sensing mediating heterotrophic nitrification-aerobic denitrification process at low temperature

Relationships between differential gene expression and heterosis in cotton hybrids developed from the foundation parent CRI-12 and its pedigree-derived lines

Best practices on the differential expression analysis of multi-species RNA-seq

Interpretation of differential gene expression results of RNA-seq data: review and integration

Gene expression–based molecular scoring of pancreas transplant rejection for a quantitative assessment of rejection severity and resistance to treatment

Identification of Differentially Expressed Gene Using Robust Singular Value Decomposition

Identification of immune-associated genes involved in latent Mycobacterium marinum infection

The use of high-throughput sequencing to investigate the diversity of defense protein genes of cucumber inoculated with Cucumber green mottle mosaic virus

Discrete distributional differential expression (D3E)--a tool for gene expression analysis of single-cell RNA-seq data

Immune cells lacking Y chromosome show dysregulation of autosomal gene expression

CancerOmicsNet: a multi-omics network-based approach to anti-cancer drug profiling

Microbes & neurodevelopment – Absence of microbiota during early life increases activity-related transcriptional pathways in the amygdala

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