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GenBank

Nucleic acids research, 2018-01, Vol.46 (D1), p.D41-D47

2018

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Integrating Hi-C links with assembly graphs for chromosome-scale assembly

PLoS computational biology, 2019-08, Vol.15 (8), p.e1007273

2019

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The European Nucleotide Archive in 2020

Nucleic acids research, 2021-01, Vol.49 (D1), p.D82-D85

2021

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Cox-nnet: An artificial neural network method for prognosis prediction of high-throughput omics data

PLoS computational biology, 2018-04, Vol.14 (4), p.e1006076-e1006076

2018

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Terminating contamination: large-scale search identifies more than 2,000,000 contaminated entries in GenBank

Genome Biology, 2020-05, Vol.21 (1), p.115-115, Article 115

2020

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Microarray is an efficient tool for circRNA profiling

Briefings in bioinformatics, 2019-07, Vol.20 (4), p.1420-1433

2019

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Removing technical variability in RNA-seq data using conditional quantile normalization

Biostatistics (Oxford, England), 2012-04, Vol.13 (2), p.204-216

2012

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Evaluation of tools for highly variable gene discovery from single-cell RNA-seq data

Briefings in bioinformatics, 2019-07, Vol.20 (4), p.1583-1589

2019

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Medical relevance of protein-truncating variants across 337,205 individuals in the UK Biobank study

Nature communications, 2018-04, Vol.9 (1), p.1612-10, Article 1612

2018

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BioSeq-Analysis: a platform for DNA, RNA and protein sequence analysis based on machine learning approaches

Briefings in bioinformatics, 2019-07, Vol.20 (4), p.1280-1294

Liu, Bin

2019

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Rare De Novo and Transmitted Copy-Number Variation in Autistic Spectrum Disorders

Neuron (Cambridge, Mass.), 2011-06, Vol.70 (5), p.886-897

2011

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lra: A long read aligner for sequences and contigs

PLoS computational biology, 2021-06, Vol.17 (6), p.e1009078-e1009078

2021

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Correcting for batch effects in case-control microbiome studies

PLoS computational biology, 2018-04, Vol.14 (4), p.e1006102-e1006102

2018

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The European Bioinformatics Institute: empowering cooperation in response to a global health crisis

Nucleic acids research, 2021-01, Vol.49 (D1), p.D29-D37

2021

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Comparative analysis of differential gene expression tools for RNA sequencing time course data

Briefings in bioinformatics, 2019-01, Vol.20 (1), p.288-298

2019

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CODEX: a normalization and copy number variation detection method for whole exome sequencing

Nucleic acids research, 2015-03, Vol.43 (6), p.e39-e39

2015

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The UNITE database for molecular identification of fungi – recent updates and future perspectives

The New phytologist, 2010-04, Vol.186 (2), p.281-285

2010

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The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata

Nucleic acids research, 2008-01, Vol.36 (Database issue), p.D475-D479

2008

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High-throughput Interpretation of Killer-cell Immunoglobulin-like Receptor Short-read Sequencing Data with PING

PLoS computational biology, 2021-08, Vol.17 (8), p.e1008904-e1008904

2021

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A new shrinkage estimator for dispersion improves differential expression detection in RNA-seq data

Biostatistics (Oxford, England), 2013-04, Vol.14 (2), p.232-243

2013

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Guitar: An R/Bioconductor Package for Gene Annotation Guided Transcriptomic Analysis of RNA-Related Genomic Features

BioMed research international, 2016-01, Vol.2016 (2016), p.1-8

2016

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ChimeRScope: a novel alignment-free algorithm for fusion transcript prediction using paired-end RNA-Seq data

Nucleic acids research, 2017-07, Vol.45 (13), p.e120-e120

2017

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CDSeq: A novel complete deconvolution method for dissecting heterogeneous samples using gene expression data

PLoS computational biology, 2019-12, Vol.15 (12), p.e1007510

2019

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Deep learning predicts short non-coding RNA functions from only raw sequence data

PLoS computational biology, 2020-11, Vol.16 (11), p.e1008415-e1008415

2020

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spads 1.0: a toolbox to perform spatial analyses on DNA sequence data sets

Molecular ecology resources, 2014-05, Vol.14 (3), p.647-651

2014

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GenBank

Integrating Hi-C links with assembly graphs for chromosome-scale assembly

The European Nucleotide Archive in 2020

Cox-nnet: An artificial neural network method for prognosis prediction of high-throughput omics data

Terminating contamination: large-scale search identifies more than 2,000,000 contaminated entries in GenBank

Microarray is an efficient tool for circRNA profiling

Removing technical variability in RNA-seq data using conditional quantile normalization

Evaluation of tools for highly variable gene discovery from single-cell RNA-seq data

Medical relevance of protein-truncating variants across 337,205 individuals in the UK Biobank study

BioSeq-Analysis: a platform for DNA, RNA and protein sequence analysis based on machine learning approaches

Rare De Novo and Transmitted Copy-Number Variation in Autistic Spectrum Disorders

lra: A long read aligner for sequences and contigs

Correcting for batch effects in case-control microbiome studies

The European Bioinformatics Institute: empowering cooperation in response to a global health crisis

Comparative analysis of differential gene expression tools for RNA sequencing time course data

CODEX: a normalization and copy number variation detection method for whole exome sequencing

The UNITE database for molecular identification of fungi – recent updates and future perspectives

The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata

High-throughput Interpretation of Killer-cell Immunoglobulin-like Receptor Short-read Sequencing Data with PING

A new shrinkage estimator for dispersion improves differential expression detection in RNA-seq data

Guitar: An R/Bioconductor Package for Gene Annotation Guided Transcriptomic Analysis of RNA-Related Genomic Features

ChimeRScope: a novel alignment-free algorithm for fusion transcript prediction using paired-end RNA-Seq data

CDSeq: A novel complete deconvolution method for dissecting heterogeneous samples using gene expression data

Deep learning predicts short non-coding RNA functions from only raw sequence data

spads 1.0: a toolbox to perform spatial analyses on DNA sequence data sets

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