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DYW deaminase domain has a distinct preference for neighboring nucleotides of the target RNA editing sites

The Plant journal : for cell and molecular biology, 2022-08, Vol.111 (3), p.756-767

2022

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The cytidine deaminase signature HxE(x)nCxxC of DYW1 binds zinc and is necessary for RNA editing of ndhD-1

The New phytologist, 2014-09, Vol.203 (4), p.1090-1095

2014

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A plant pentatricopeptide repeat protein with a DYW-deaminase domain is sufficient for catalyzing C-to-U RNA editing in vitro

The Journal of biological chemistry, 2020-03, Vol.295 (11), p.3497-3505

2020

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Understanding RNA editing and its use in gene editing

Gene and genome editing, 2022-12, Vol.3-4, p.100021, Article 100021

2022

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The DYW Domains of Pentatricopeptide Repeat RNA Editing Factors Contribute to Discriminate Target and Non-Target Editing Sites

Plant and cell physiology, 2018-08, Vol.59 (8), p.1652-1659

2018

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Towards a plant model for enigmatic U-to-C RNA editing: the organelle genomes, transcriptomes, editomes and candidate RNA editing factors in the hornwort Anthoceros agrestis

The New phytologist, 2020-03, Vol.225 (5), p.1974-1992

2020

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The Gating Domain of MEF28 Is Essential for Editing Two Contiguous Cytidines in nad2 mRNA in Arabidopsis thaliana

Plant and cell physiology, 2024-05, Vol.65 (4), p.590-601

2024

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RNA editing in plants: Machinery and flexibility of site recognition

Biochimica et biophysica acta, 2015-09, Vol.1847 (9), p.779-785

Shikanai, Toshiharu

2015

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Is RNA editing truly absent in the complex thalloid liverworts (Marchantiopsida)? Evidence of extensive RNA editing from Cyathodium cavernarum

The New phytologist, 2024-06, Vol.242 (6), p.2817-2831

2024

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Dissecting the molecular puzzle of the editosome core in Arabidopsis organelles

Plant science (Limerick), 2024-07, Vol.344, p.112101-112101, Article 112101

2024

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The dicot homolog of maize PPR103 carries a C-terminal DYW domain and may have a role in C-to-U editing of some chloroplast RNA transcripts

Plant molecular biology, 2024-04, Vol.114 (2), p.28-28, Article 28

2024

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A protein with an unusually short PPR domain, MEF8, affects editing at over 60 Arabidopsis mitochondrial C targets of RNA editing

The Plant journal : for cell and molecular biology, 2017-11, Vol.92 (4), p.638-649

2017

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A hypothesis on the identification of the editing enzyme in plant organelles

FEBS letters, 2007-09, Vol.581 (22), p.4132-4138

2007

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The PPR-DYW proteins are required for RNA editing of rps14, cox1 and nad5 transcripts in Physcomitrella patens mitochondria

FEBS letters, 2011-07, Vol.585 (14), p.2367-2371

2011

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A DYW‐protein knockout in Physcomitrella affects two closely spaced mitochondrial editing sites and causes a severe developmental phenotype

The Plant journal : for cell and molecular biology, 2013-11, Vol.76 (3), p.420-432

2013

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MEF46 and MEF47 are novel specificity factors for RNA editing sites in mitochondrial nad transcripts

Mitochondrion, 2020-07, Vol.53, p.121-127

2020

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Identification of a pentatricopeptide repeat RNA editing factor in Physcomitrella patens chloroplasts

FEBS letters, 2014-11, Vol.588 (21), p.4060-4064

2014

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A PPR‐DYW protein is required for splicing of a group II intron of cox1 pre‐mRNA in Physcomitrella patens

The Plant journal : for cell and molecular biology, 2012-04, Vol.70 (2), p.271-278

2012

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The moss pentatricopeptide repeat protein with a DYW domain is responsible for RNA editing of mitochondrial ccmFc transcript

The Plant journal : for cell and molecular biology, 2010-05, Vol.62 (4), p.560-570

2010

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Targeted Gene Disruption Identifies Three PPR-DYW Proteins Involved in RNA Editing for Five Editing Sites of the Moss Mitochondrial Transcripts

Plant and cell physiology, 2010-11, Vol.51 (11), p.1942-1949

2010

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A conserved DYW domain of the pentatricopeptide repeat protein possesses a novel endoribonuclease activity

FEBS letters, 2008-12, Vol.582 (30), p.4163-4168

2008

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The E-Class PPR Protein MEF3 of Arabidopsis thaliana Can Also Function in Mitochondrial RNA Editing With an Additional DYW Domain

Plant and cell physiology, 2012-02, Vol.53 (2), p.358-367

2012

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Architecture of the PPR gene family in the moss Physcomitrella patens

RNA biology, 2013, Vol.10 (9), p.1439-1445

2013

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Mitochondrial RNA editing PPR proteins can tolerate protein tags at E as well as at DYW domain termini

Frontiers in plant science, 2014-04, Vol.5, p.127-127

2014

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RNA editing competence of trans-factor MEF1 is modulated by ecotype-specific differences but requires the DYW domain

FEBS letters, 2010-10, Vol.584 (19), p.4181-4186

2010

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DYW deaminase domain has a distinct preference for neighboring nucleotides of the target RNA editing sites

The cytidine deaminase signature HxE(x)nCxxC of DYW1 binds zinc and is necessary for RNA editing of ndhD-1

A plant pentatricopeptide repeat protein with a DYW-deaminase domain is sufficient for catalyzing C-to-U RNA editing in vitro

Understanding RNA editing and its use in gene editing

The DYW Domains of Pentatricopeptide Repeat RNA Editing Factors Contribute to Discriminate Target and Non-Target Editing Sites

Towards a plant model for enigmatic U-to-C RNA editing: the organelle genomes, transcriptomes, editomes and candidate RNA editing factors in the hornwort Anthoceros agrestis

The Gating Domain of MEF28 Is Essential for Editing Two Contiguous Cytidines in nad2 mRNA in Arabidopsis thaliana

RNA editing in plants: Machinery and flexibility of site recognition

Is RNA editing truly absent in the complex thalloid liverworts (Marchantiopsida)? Evidence of extensive RNA editing from Cyathodium cavernarum

Dissecting the molecular puzzle of the editosome core in Arabidopsis organelles

The dicot homolog of maize PPR103 carries a C-terminal DYW domain and may have a role in C-to-U editing of some chloroplast RNA transcripts

A protein with an unusually short PPR domain, MEF8, affects editing at over 60 Arabidopsis mitochondrial C targets of RNA editing

A hypothesis on the identification of the editing enzyme in plant organelles

The PPR-DYW proteins are required for RNA editing of rps14, cox1 and nad5 transcripts in Physcomitrella patens mitochondria

A DYW‐protein knockout in Physcomitrella affects two closely spaced mitochondrial editing sites and causes a severe developmental phenotype

MEF46 and MEF47 are novel specificity factors for RNA editing sites in mitochondrial nad transcripts

Identification of a pentatricopeptide repeat RNA editing factor in Physcomitrella patens chloroplasts

A PPR‐DYW protein is required for splicing of a group II intron of cox1 pre‐mRNA in Physcomitrella patens

The moss pentatricopeptide repeat protein with a DYW domain is responsible for RNA editing of mitochondrial ccmFc transcript

Targeted Gene Disruption Identifies Three PPR-DYW Proteins Involved in RNA Editing for Five Editing Sites of the Moss Mitochondrial Transcripts

A conserved DYW domain of the pentatricopeptide repeat protein possesses a novel endoribonuclease activity

The E-Class PPR Protein MEF3 of Arabidopsis thaliana Can Also Function in Mitochondrial RNA Editing With an Additional DYW Domain

Architecture of the PPR gene family in the moss Physcomitrella patens

Mitochondrial RNA editing PPR proteins can tolerate protein tags at E as well as at DYW domain termini

RNA editing competence of trans-factor MEF1 is modulated by ecotype-specific differences but requires the DYW domain

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