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Drug–DNA interactions and their study by UV–Visible, fluorescence spectroscopies and cyclic voltametry

Journal of photochemistry and photobiology. B, Biology, 2013-07, Vol.124, p.1-19

2013

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A structural view of bacterial DNA replication

Protein science, 2019-06, Vol.28 (6), p.990-1004

Oakley, Aaron J.

2019

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DNA Interactions with Drugs and Other Small Ligands: Single Molecule Approaches and Techniques

Rocha, Marcio Santos

1, 2023

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Recent advances in the structural mechanisms of DNA glycosylases

Biochimica et biophysica acta, 2013-01, Vol.1834 (1), p.247-271

2013

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Coupling between Histone Conformations and DNA Geometry in Nucleosomes on a Microsecond Timescale: Atomistic Insights into Nucleosome Functions

Journal of molecular biology, 2016-01, Vol.428 (1), p.221-237

2016

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MarR family transcription factors: dynamic variations on a common scaffold

Critical reviews in biochemistry and molecular biology, 2017-11, Vol.52 (6), p.595-613

2017

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DNA G‐quadruplexes show strong interaction with DNA methyltransferases in vitro

FEBS letters, 2016-09, Vol.590 (17), p.2870-2883

2016

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Targeted Methylation and Gene Silencing of VEGF-A in Human Cells by Using a Designed Dnmt3a–Dnmt3L Single-Chain Fusion Protein with Increased DNA Methylation Activity

Journal of molecular biology, 2013-02, Vol.425 (3), p.479-491

2013

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Immunity proteins of dual nuclease T6SS effectors function as transcriptional repressors

EMBO reports, 2021-06, Vol.22 (6), p.e51857-n/a

2021

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High-speed AFM imaging reveals DNA capture and loop extrusion dynamics by cohesin-NIPBL

The Journal of biological chemistry, 2023-11, Vol.299 (11), p.105296-105296, Article 105296

2023

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ATP-driven Rad50 conformations regulate DNA tethering, end resection, and ATM checkpoint signaling

The EMBO journal, 2014-03, Vol.33 (5), p.482-500

2014

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Structure of the HLTF HIRAN domain and its functional implications in regression of a stalled replication fork

Acta crystallographica. Section D, Biological crystallography., 2020-08, Vol.76 (8), p.729-735

2020

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Heterogeneity in winged helix‐turn‐helix and substrate DNA interactions: Insights from theory and experiments

Journal of cellular biochemistry, 2023-03, Vol.124 (3), p.337-358

2023

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Analyzing paramagnetic NMR data on target DNA search by proteins using a discrete‐state kinetic model for translocation

Biopolymers, 2024-03, Vol.115 (2), p.e23553-n/a

2024

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Solvent Mediated Interactions in the Structure of the Nucleosome Core Particle at 1.9 Å Resolution

Journal of molecular biology, 2002-06, Vol.319 (5), p.1097-1113

2002

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In various protein complexes, disordered protomers have large per-residue surface areas and area of protein-, DNA- and RNA-binding interfaces

FEBS letters, 2015-09, Vol.589 (19), p.2561-2569

2015

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A stress‐associated protein, AtSAP13, from Arabidopsis thaliana provides tolerance to multiple abiotic stresses

Plant, cell and environment, 2018-05, Vol.41 (5), p.1171-1185

2018

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Binding of DNA with Rhodamine B: Spectroscopic and molecular modeling studies

Dyes and pigments, 2013-11, Vol.99 (2), p.412-422

2013

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The multifarious MerR family of transcriptional regulators

Molecular microbiology, 2024-02, Vol.121 (2), p.230-242

2024

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Mgs1 protein supports genome stability via recognition of G‐quadruplex DNA structures

The FASEB journal, 2020-09, Vol.34 (9), p.12646-12662

2020

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Structure of HIRAN domain of human HLTF bound to duplex DNA provides structural basis for DNA unwinding to initiate replication fork regression

Journal of biochemistry (Tokyo), 2020-06, Vol.167 (6), p.597-602

2020

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Mechanistic insights into heme-mediated transcriptional regulation via a bacterial manganese-binding iron regulator, iron response regulator (Irr)

The Journal of biological chemistry, 2020-08, Vol.295 (32), p.11316-11325

2020

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Structure and DNA binding analysis of AT‐rich interaction domain present in human BAF‐B specific subunit BAF250b

Protein science, 2022-05, Vol.31 (5), p.e4294-n/a

2022

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Studies of Local DNA Backbone Conformation and Conformational Disorder Using Site-Specific Exciton-Coupled Dimer Probe Spectroscopy

Annual review of physical chemistry, 2023-04, Vol.74 (1), p.245-265

2023

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The multifaceted capacity of Dps proteins to combat bacterial stress conditions: Detoxification of iron and hydrogen peroxide and DNA binding

Biochimica et biophysica acta, 2010-08, Vol.1800 (8), p.798-805

2010

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Drug–DNA interactions and their study by UV–Visible, fluorescence spectroscopies and cyclic voltametry

A structural view of bacterial DNA replication

DNA Interactions with Drugs and Other Small Ligands: Single Molecule Approaches and Techniques

Recent advances in the structural mechanisms of DNA glycosylases

Coupling between Histone Conformations and DNA Geometry in Nucleosomes on a Microsecond Timescale: Atomistic Insights into Nucleosome Functions

MarR family transcription factors: dynamic variations on a common scaffold

DNA G‐quadruplexes show strong interaction with DNA methyltransferases in vitro

Targeted Methylation and Gene Silencing of VEGF-A in Human Cells by Using a Designed Dnmt3a–Dnmt3L Single-Chain Fusion Protein with Increased DNA Methylation Activity

Immunity proteins of dual nuclease T6SS effectors function as transcriptional repressors

High-speed AFM imaging reveals DNA capture and loop extrusion dynamics by cohesin-NIPBL

ATP-driven Rad50 conformations regulate DNA tethering, end resection, and ATM checkpoint signaling

Structure of the HLTF HIRAN domain and its functional implications in regression of a stalled replication fork

Heterogeneity in winged helix‐turn‐helix and substrate DNA interactions: Insights from theory and experiments

Analyzing paramagnetic NMR data on target DNA search by proteins using a discrete‐state kinetic model for translocation

Solvent Mediated Interactions in the Structure of the Nucleosome Core Particle at 1.9 Å Resolution

In various protein complexes, disordered protomers have large per-residue surface areas and area of protein-, DNA- and RNA-binding interfaces

A stress‐associated protein, AtSAP13, from Arabidopsis thaliana provides tolerance to multiple abiotic stresses

Binding of DNA with Rhodamine B: Spectroscopic and molecular modeling studies

The multifarious MerR family of transcriptional regulators

Mgs1 protein supports genome stability via recognition of G‐quadruplex DNA structures

Structure of HIRAN domain of human HLTF bound to duplex DNA provides structural basis for DNA unwinding to initiate replication fork regression

Mechanistic insights into heme-mediated transcriptional regulation via a bacterial manganese-binding iron regulator, iron response regulator (Irr)

Structure and DNA binding analysis of AT‐rich interaction domain present in human BAF‐B specific subunit BAF250b

Studies of Local DNA Backbone Conformation and Conformational Disorder Using Site-Specific Exciton-Coupled Dimer Probe Spectroscopy

The multifaceted capacity of Dps proteins to combat bacterial stress conditions: Detoxification of iron and hydrogen peroxide and DNA binding

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