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Protein Maturation and Proteolysis in Plant Plastids, Mitochondria, and Peroxisomes

Annual review of plant biology, 2015-04, Vol.66 (1), p.75-111

van Wijk, Klaas J

2015

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Sorting signals, N-terminal modifications and abundance of the chloroplast proteome

PloS one, 2008-04, Vol.3 (4), p.e1994-e1994

2008

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Organization, function and substrates of the essential Clp protease system in plastids

Biochimica et biophysica acta, 2015-09, Vol.1847 (9), p.915-930

2015

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The Functional Network of the Arabidopsis Plastoglobule Proteome Based on Quantitative Proteomics and Genome-Wide Coexpression Analysis

Plant physiology (Bethesda), 2012-03, Vol.158 (3), p.1172-1192

2012

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Chloroplast RH3 DEAD Box RNA Helicases in Maize and Arabidopsis Function in Splicing of Specific Group II Introns and Affect Chloroplast Ribosome Biogenesis

Plant physiology (Bethesda), 2012-07, Vol.159 (3), p.961-974

2012

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Protein Profiling of Plastoglobules in Chloroplasts and Chromoplasts. A Surprising Site for Differential Accumulation of Metabolic Enzymes

Plant physiology (Bethesda), 2006-03, Vol.140 (3), p.984-997

2006

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The Plastid and Mitochondrial Peptidase Network in Arabidopsis thaliana: A Foundation for Testing Genetic Interactions and Functions in Organellar Proteostasis

The Plant cell, 2017-11, Vol.29 (11), p.2687-2710

2017

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Plastoglobuli: Plastid Microcompartments with Integrated Functions in Metabolism, Plastid Developmental Transitions, and Environmental Adaptation

Annual review of plant biology, 2017-04, Vol.68, p.253

2017

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Correlation of mRNA and protein abundance in the developing maize leaf

The Plant journal : for cell and molecular biology, 2014-05, Vol.78 (3), p.424-440

2014

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Meta-Analysis of Arabidopsis thaliana Phospho-Proteomics Data Reveals Compartmentalization of Phosphorylation Motifs

The Plant cell, 2014-06, Vol.26 (6), p.2367-2389

2014

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Redesigning photosynthesis to sustainably meet global food and bioenergy demand

Proceedings of the National Academy of Sciences - PNAS, 2015-07, Vol.112 (28), p.8529-8536

2015

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Does the Ubiquitination Degradation Pathway Really Reach inside of the Chloroplast? A Re-Evaluation of Mass Spectrometry-Based Assignments of Ubiquitination

Journal of proteome research, 2023-06, Vol.22 (6), p.2079-2091

2023

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Posttranslational Control of ALA Synthesis Includes GluTR Degradation by Clp Protease and Stabilization by GluTR-Binding Protein

Plant physiology (Bethesda), 2016-04, Vol.170 (4), p.2040-2051

2016

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The Arabidopsis PeptideAtlas: Harnessing worldwide proteomics data to create a comprehensive community proteomics resource

The Plant cell, 2021-11, Vol.33 (11), p.3421-3453

2021

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Reconstruction of Metabolic Pathways, Protein Expression, and Homeostasis Machineries across Maize Bundle Sheath and Mesophyll Chloroplasts: Large-Scale Quantitative Proteomics Using the First Maize Genome Assembly

Plant physiology (Bethesda), 2010-03, Vol.152 (3), p.1219-1250

2010

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Plastid Proteomics in Higher Plants: Current State and Future Goals

Plant physiology (Bethesda), 2011-04, Vol.155 (4), p.1578-1588

2011

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PPDB, the Plant Proteomics Database at Cornell

Nucleic acids research, 2009-01, Vol.37 (Database issue), p.D969

2009

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In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database

The Plant cell, 2004-02, Vol.16 (2), p.478-499

2004

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Megadalton Complexes in the Chloroplast Stroma of Arabidopsis thaliana Characterized by Size Exclusion Chromatography, Mass Spectrometry, and Hierarchical Clustering

Molecular & cellular proteomics, 2010-07, Vol.9 (7), p.1594-1615

2010

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Posttranslational Protein Modifications in Plant Metabolism

Plant physiology (Bethesda), 2015-11, Vol.169 (3), p.1469-1487

2015

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RIP1, a member of an Arabidopsis protein family, interacts with the protein RARE1 and broadly affects RNA editing

Proceedings of the National Academy of Sciences - PNAS, 2012-05, Vol.109 (22), p.8372-8373

2012

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Discovery of a Unique Clp Component, ClpF, in Chloroplasts: A Proposed Binary ClpF-ClpS1 Adaptor Complex Functions in Substrate Recognition and Delivery

The Plant cell, 2015-10, Vol.27 (10), p.2677-2691

2015

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Nucleoid-Enriched Proteomes in Developing Plastids and Chloroplasts from Maize Leaves: A New Conceptual Framework for Nucleoid Functions

Plant physiology (Bethesda), 2012-01, Vol.158 (1), p.156-189

2012

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The Clp protease system; a central component of the chloroplast protease network

Biochimica et biophysica acta, 2011-08, Vol.1807 (8), p.999-1011

2011

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Structural and Metabolic Transitions of C₄ Leaf Development and Differentiation Defined by Microscopy and Quantitative Proteomics in Maize

The Plant cell, 2010-11, Vol.22 (11), p.3509-3542

2010

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Protein Maturation and Proteolysis in Plant Plastids, Mitochondria, and Peroxisomes

Sorting signals, N-terminal modifications and abundance of the chloroplast proteome

Organization, function and substrates of the essential Clp protease system in plastids

The Functional Network of the Arabidopsis Plastoglobule Proteome Based on Quantitative Proteomics and Genome-Wide Coexpression Analysis

Chloroplast RH3 DEAD Box RNA Helicases in Maize and Arabidopsis Function in Splicing of Specific Group II Introns and Affect Chloroplast Ribosome Biogenesis

Protein Profiling of Plastoglobules in Chloroplasts and Chromoplasts. A Surprising Site for Differential Accumulation of Metabolic Enzymes

The Plastid and Mitochondrial Peptidase Network in Arabidopsis thaliana: A Foundation for Testing Genetic Interactions and Functions in Organellar Proteostasis

Plastoglobuli: Plastid Microcompartments with Integrated Functions in Metabolism, Plastid Developmental Transitions, and Environmental Adaptation

Correlation of mRNA and protein abundance in the developing maize leaf

Meta-Analysis of Arabidopsis thaliana Phospho-Proteomics Data Reveals Compartmentalization of Phosphorylation Motifs

Redesigning photosynthesis to sustainably meet global food and bioenergy demand

Does the Ubiquitination Degradation Pathway Really Reach inside of the Chloroplast? A Re-Evaluation of Mass Spectrometry-Based Assignments of Ubiquitination

Posttranslational Control of ALA Synthesis Includes GluTR Degradation by Clp Protease and Stabilization by GluTR-Binding Protein

The Arabidopsis PeptideAtlas: Harnessing worldwide proteomics data to create a comprehensive community proteomics resource

Reconstruction of Metabolic Pathways, Protein Expression, and Homeostasis Machineries across Maize Bundle Sheath and Mesophyll Chloroplasts: Large-Scale Quantitative Proteomics Using the First Maize Genome Assembly

Plastid Proteomics in Higher Plants: Current State and Future Goals

PPDB, the Plant Proteomics Database at Cornell

In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database

Megadalton Complexes in the Chloroplast Stroma of Arabidopsis thaliana Characterized by Size Exclusion Chromatography, Mass Spectrometry, and Hierarchical Clustering

Posttranslational Protein Modifications in Plant Metabolism

RIP1, a member of an Arabidopsis protein family, interacts with the protein RARE1 and broadly affects RNA editing

Discovery of a Unique Clp Component, ClpF, in Chloroplasts: A Proposed Binary ClpF-ClpS1 Adaptor Complex Functions in Substrate Recognition and Delivery

Nucleoid-Enriched Proteomes in Developing Plastids and Chloroplasts from Maize Leaves: A New Conceptual Framework for Nucleoid Functions

The Clp protease system; a central component of the chloroplast protease network

Structural and Metabolic Transitions of C₄ Leaf Development and Differentiation Defined by Microscopy and Quantitative Proteomics in Maize

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