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Integrating structure-based machine learning and co-evolution to investigate specificity in plant sesquiterpene synthases

PLoS computational biology, 2021-03, Vol.17 (3), p.e1008197-e1008197

2021

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Divergent regulation of Arabidopsis SAUR genes: a focus on the SAUR10-clade

BMC plant biology, 2017-12, Vol.17 (1), p.245-245, Article 245

2017

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Bayesian Markov Random Field analysis for protein function prediction based on network data

PloS one, 2010-02, Vol.5 (2), p.e9293-e9293

2010

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Solvated docking: introducing water into the modelling of biomolecular complexes

Bioinformatics, 2006-10, Vol.22 (19), p.2340-2347

2006

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Simulation of organ patterning on the floral meristem using a polar auxin transport model

PloS one, 2012-01, Vol.7 (1), p.e28762-e28762

2012

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(r)evolution of gene regulatory networks controlling Arabidopsis plant reproduction: a two-decade history

Journal of experimental botany, 2014-09, Vol.65 (17), p.4731-4745

2014

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A catalogue of recombination coldspots in interspecific tomato hybrids

PLoS genetics, 2024-07, Vol.20 (7), p.e1011336

2024

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Solvated protein-protein docking using Kyte-Doolittle-based water preferences

Proteins, structure, function, and bioinformatics, 2013-03, Vol.81 (3), p.510-518

2013

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Sequence motifs in MADS transcription factors responsible for specificity and diversification of protein-protein interaction

PLoS computational biology, 2010-11, Vol.6 (11), p.e1001017-e1001017

2010

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CAPICE: a computational method for Consequence-Agnostic Pathogenicity Interpretation of Clinical Exome variations

Genome medicine, 2020-08, Vol.12 (1), p.1-75, Article 75

2020

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SEPALLATA3: the 'glue' for MADS box transcription factor complex formation

Genome Biology, 2009-02, Vol.10 (2), p.R24-R24

2009

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Similarities between plant traits based on their connection to underlying gene functions

PloS one, 2017-08, Vol.12 (8), p.e0182097-e0182097

2017

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Mutational robustness of gene regulatory networks

PloS one, 2012-01, Vol.7 (1), p.e30591-e30591

2012

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Chasing breeding footprints through structural variations in Cucumis melo and wild relatives

G3 : genes - genomes - genetics, 2021-01, Vol.11 (1)

2021

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Rice cytochrome P450 MAX1 homologs catalyze distinct steps in strigolactone biosynthesis

Nature chemical biology, 2014-12, Vol.10 (12), p.1028-1033

2014

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The tomato cytochrome P450 CYP712G1 catalyses the double oxidation of orobanchol en route to the rhizosphere signalling strigolactone, solanacol

The New phytologist, 2022-09, Vol.235 (5), p.1884-1899

2022

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Individual lipid transfer proteins from Tanacetum parthenium show different specificity for extracellular accumulation of sesquiterpenes

Plant molecular biology, 2023-01, Vol.111 (1-2), p.153-166

2023

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HADDOCK versus HADDOCK: New features and performance of HADDOCK2.0 on the CAPRI targets

Proteins, structure, function, and bioinformatics, 2007-12, Vol.69 (4), p.726-733

2007

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A gene regulatory network critical for axillary bud dormancy directly controlled by Arabidopsis BRANCHED1

The New phytologist, 2024-02, Vol.241 (3), p.1193-1209

2024

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Characterization of SOC1's Central Role in Flowering by the Identification of Its Upstream and Downstream Regulators

Plant physiology (Bethesda), 2012-09, Vol.160 (1), p.433-449

2012

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Contribution of homoeologous exchange to domestication of polyploid Brassica

Genome Biology, 2024-08, Vol.25 (1), p.1-25

2024

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Protein interaction mapping reveals widespread targeting of development‐related host transcription factors by phytoplasma effectors

The Plant journal : for cell and molecular biology, 2024-02, Vol.117 (4), p.1281-1297

2024

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Arabidopsis Class I and Class II TCP Transcription Factors Regulate Jasmonic Acid Metabolism and Leaf Development Antagonistically

Plant physiology (Bethesda), 2012-08, Vol.159 (4), p.1511-1523

2012

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Designing Eukaryotic Gene Expression Regulation Using Machine Learning

Trends in biotechnology (Regular ed.), 2020-02, Vol.38 (2), p.191-201

2020

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DNA sequence and shape are predictive for meiotic crossovers throughout the plant kingdom

The Plant journal : for cell and molecular biology, 2018-08, Vol.95 (4), p.686-699

2018

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Integrating structure-based machine learning and co-evolution to investigate specificity in plant sesquiterpene synthases

Divergent regulation of Arabidopsis SAUR genes: a focus on the SAUR10-clade

Bayesian Markov Random Field analysis for protein function prediction based on network data

Solvated docking: introducing water into the modelling of biomolecular complexes

Simulation of organ patterning on the floral meristem using a polar auxin transport model

(r)evolution of gene regulatory networks controlling Arabidopsis plant reproduction: a two-decade history

A catalogue of recombination coldspots in interspecific tomato hybrids

Solvated protein-protein docking using Kyte-Doolittle-based water preferences

Sequence motifs in MADS transcription factors responsible for specificity and diversification of protein-protein interaction

CAPICE: a computational method for Consequence-Agnostic Pathogenicity Interpretation of Clinical Exome variations

SEPALLATA3: the 'glue' for MADS box transcription factor complex formation

Similarities between plant traits based on their connection to underlying gene functions

Mutational robustness of gene regulatory networks

Chasing breeding footprints through structural variations in Cucumis melo and wild relatives

Rice cytochrome P450 MAX1 homologs catalyze distinct steps in strigolactone biosynthesis

The tomato cytochrome P450 CYP712G1 catalyses the double oxidation of orobanchol en route to the rhizosphere signalling strigolactone, solanacol

Individual lipid transfer proteins from Tanacetum parthenium show different specificity for extracellular accumulation of sesquiterpenes

HADDOCK versus HADDOCK: New features and performance of HADDOCK2.0 on the CAPRI targets

A gene regulatory network critical for axillary bud dormancy directly controlled by Arabidopsis BRANCHED1

Characterization of SOC1's Central Role in Flowering by the Identification of Its Upstream and Downstream Regulators

Contribution of homoeologous exchange to domestication of polyploid Brassica

Protein interaction mapping reveals widespread targeting of development‐related host transcription factors by phytoplasma effectors

Arabidopsis Class I and Class II TCP Transcription Factors Regulate Jasmonic Acid Metabolism and Leaf Development Antagonistically

Designing Eukaryotic Gene Expression Regulation Using Machine Learning

DNA sequence and shape are predictive for meiotic crossovers throughout the plant kingdom

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