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BioVenn - a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams

BMC genomics, 2008-10, Vol.9 (1), p.488-488

2008

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Prednisolone-induced differential gene expression in mouse liver carrying wild type or a dimerization-defective glucocorticoid receptor

BMC genomics, 2010-06, Vol.11 (1), p.359-359, Article 359

2010

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Pharmacophore Fingerprint-Based Approach to Binding Site Subpocket Similarity and Its Application to Bioisostere Replacement

Journal of chemical information and modeling, 2012-08, Vol.52 (8), p.2031-2043

2012

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Literature mining for the discovery of hidden connections between drugs, genes and diseases

PLoS computational biology, 2010-09, Vol.6 (9), p.e1000943-136

2010

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Integrating gene expression and GO classification for PCA by preclustering

BMC bioinformatics, 2010-03, Vol.11 (1), p.158-158, Article 158

2010

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Comparative Analysis of Pharmacophore Screening Tools

Journal of chemical information and modeling, 2012-06, Vol.52 (6), p.1607-1620

2012

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In Silico Veritas: The Pitfalls and Challenges of Predicting GPCR-Ligand Interactions

Pharmaceuticals, 2011-09, Vol.4 (9), p.1196-1215

2011

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Flexible protein-ligand docking using the Fleksy protocol

Journal of computational chemistry, 2012-05, Vol.33 (12), p.1215-1217

2012

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CoPub: a literature-based keyword enrichment tool for microarray data analysis

Nucleic acids research, 2008-07, Vol.36 (Web Server issue), p.W406-W410

2008

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From the protein's perspective: the benefits and challenges of protein structure-based pharmacophore modeling

MedChemComm, 2012-01, Vol.3 (1), p.28-38

2012

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Structural Basis for Agonism and Antagonism for a Set of Chemically Related Progesterone Receptor Modulators

The Journal of biological chemistry, 2011-10, Vol.286 (40), p.35079-35086

2011

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Revisiting the Rule of Five on the Basis of Pharmacokinetic Data from Rat

ChemMedChem, 2011-11, Vol.6 (11), p.1967-1970

2011

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ss-TEA: Entropy based identification of receptor specific ligand binding residues from a multiple sequence alignment of class A GPCRs

BMC bioinformatics, 2011-08, Vol.12 (1), p.332-332, Article 332

2011

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PhyloPat: an updated version of the phylogenetic pattern database contains gene neighborhood

Nucleic acids research, 2009-01, Vol.37 (Database issue), p.D731-D737

2009

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GPCRDB: information system for G protein-coupled receptors

Nucleic acids research, 2011-01, Vol.39 (Database issue), p.D309-D319

2011

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A Flexible Approach to Induced Fit Docking

Journal of medicinal chemistry, 2007-12, Vol.50 (26), p.6507-6518

2007

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A family-based approach reveals the function of residues in the nuclear receptor ligand-binding domain

Journal of molecular biology, 2004-08, Vol.341 (2), p.321-335

2004

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PhyloPat: phylogenetic pattern analysis of eukaryotic genes

BMC bioinformatics, 2006-09, Vol.7 (1), p.398-398, Article 398

2006

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Data-driven medicinal chemistry in the era of big data

Drug discovery today, 2014-07, Vol.19 (7), p.859-868

2014

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Testing statistical significance scores of sequence comparison methods with structure similarity

BMC bioinformatics, 2006-10, Vol.7 (1), p.444-444, Article 444

2006

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Identification of new biomarker candidates for glucocorticoid induced insulin resistance using literature mining

BioData mining, 2013-02, Vol.6 (1), p.2-2, Article 2

2013

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Comparison between steroid binding to membrane progesterone receptor α (mPRα) and to nuclear progesterone receptor: Correlation with physicochemical properties assessed by comparative molecular field analysis and identification of mPRα-specific agonists

Steroids, 2010-04, Vol.75 (4), p.314-322

2010

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X-ray Structures of Progesterone Receptor Ligand Binding Domain in Its Agonist State Reveal Differing Mechanisms for Mixed Profiles of 11β-Substituted Steroids

The Journal of biological chemistry, 2012-06, Vol.287 (24), p.20333-20343

2012

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CoPub update: CoPub 5.0 a text mining system to answer biological questions

Nucleic acids research, 2011-07, Vol.39 (Web Server issue), p.W450-W454

2011

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Snooker: A Structure-Based Pharmacophore Generation Tool Applied to Class A GPCRs

Journal of chemical information and modeling, 2011-09, Vol.51 (9), p.2277-2292

2011

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BioVenn - a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams

Prednisolone-induced differential gene expression in mouse liver carrying wild type or a dimerization-defective glucocorticoid receptor

Pharmacophore Fingerprint-Based Approach to Binding Site Subpocket Similarity and Its Application to Bioisostere Replacement

Literature mining for the discovery of hidden connections between drugs, genes and diseases

Integrating gene expression and GO classification for PCA by preclustering

Comparative Analysis of Pharmacophore Screening Tools

In Silico Veritas: The Pitfalls and Challenges of Predicting GPCR-Ligand Interactions

Flexible protein-ligand docking using the Fleksy protocol

CoPub: a literature-based keyword enrichment tool for microarray data analysis

From the protein's perspective: the benefits and challenges of protein structure-based pharmacophore modeling

Structural Basis for Agonism and Antagonism for a Set of Chemically Related Progesterone Receptor Modulators

Revisiting the Rule of Five on the Basis of Pharmacokinetic Data from Rat

ss-TEA: Entropy based identification of receptor specific ligand binding residues from a multiple sequence alignment of class A GPCRs

PhyloPat: an updated version of the phylogenetic pattern database contains gene neighborhood

GPCRDB: information system for G protein-coupled receptors

A Flexible Approach to Induced Fit Docking

A family-based approach reveals the function of residues in the nuclear receptor ligand-binding domain

PhyloPat: phylogenetic pattern analysis of eukaryotic genes

Data-driven medicinal chemistry in the era of big data

Testing statistical significance scores of sequence comparison methods with structure similarity

Identification of new biomarker candidates for glucocorticoid induced insulin resistance using literature mining

Comparison between steroid binding to membrane progesterone receptor α (mPRα) and to nuclear progesterone receptor: Correlation with physicochemical properties assessed by comparative molecular field analysis and identification of mPRα-specific agonists

X-ray Structures of Progesterone Receptor Ligand Binding Domain in Its Agonist State Reveal Differing Mechanisms for Mixed Profiles of 11β-Substituted Steroids

CoPub update: CoPub 5.0 a text mining system to answer biological questions

Snooker: A Structure-Based Pharmacophore Generation Tool Applied to Class A GPCRs

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