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Improving small RNA-seq by using a synthetic spike-in set for size-range quality control together with a set for data normalization

Nucleic acids research, 2015-08, Vol.43 (14), p.e89

2015

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Combining next-generation sequencing and microarray technology into a transcriptomics approach for the non-model organism Chironomus riparius

PloS one, 2012-10, Vol.7 (10), p.e48096

2012

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Transcriptome dynamics in early zebrafish embryogenesis determined by high-resolution time course analysis of 180 successive, individual zebrafish embryos

BMC genomics, 2017-04, Vol.18 (1), p.287-287, Article 287

2017

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The dynamics of early-state transcriptional changes and aggregate formation in a Huntington's disease cell model

BMC genomics, 2017-05, Vol.18 (1), p.373-373, Article 373

2017

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Gene Expression Patterns and Life Cycle Responses of Toxicant-Exposed Chironomids

Environmental science & technology, 2012-11, Vol.46 (22), p.12679-12686

2012

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The Effect of the Stringent Response and Oxidative Stress Response on Fitness Costs of De Novo Acquisition of Antibiotic Resistance

International journal of molecular sciences, 2024-02, Vol.25 (5), p.2582

2024

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Salvaging Affymetrix probes after probe-level re-annotation

BMC research notes, 2008-08, Vol.1 (1), p.66-66, Article 66

2008

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A 3-year evaluation of preclinicaltrials.eu reveals room for improvement in preregistration of animal studies

PLoS biology, 2021-09, Vol.19 (9), p.e3001397-e3001397

2021

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Spatially confined folding of chromatin in the interphase nucleus

Proceedings of the National Academy of Sciences - PNAS, 2009-03, Vol.106 (10), p.3812-3817

2009

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Reactive oxygen species accelerate de novo acquisition of antibiotic resistance in E. coli

iScience, 2023-12, Vol.26 (12), p.108373-108373, Article 108373

2023

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Integrating heterogeneous sequence information for transcriptome-wide microarray design; a Zebrafish example

BMC research notes, 2010-07, Vol.3 (1), p.192-192, Article 192

2010

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Role of RelA-synthesized (p)ppGpp and ROS-induced mutagenesis in de novo acquisition of antibiotic resistance in E. coli

iScience, 2024-04, Vol.27 (4), p.109579-109579, Article 109579

2024

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Genome Sequence of a New Carnation Small Viroid-Like RNA, CarSV-1

Microbiology resource announcements, 2023-03, Vol.12 (3), p.e0121922-e0121922

2023

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The Three-Dimensional Structure of Human Interphase Chromosomes Is Related to the Transcriptome Map

Molecular and Cellular Biology, 2007-06, Vol.27 (12), p.4475-4487

2007

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Genome sequences of 10 new carnation mottle virus variants

Microbiology resource announcements, 2023-08, Vol.12 (9), p.e0018923-e0018923

2023

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Transcriptome data on maternal RNA of 24 individual zebrafish eggs from five sibling mothers

Data in brief, 2016-09, Vol.8, p.69-72

2016

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In Vivo HP1 Targeting Causes Large-Scale Chromatin Condensation and Enhanced Histone Lysine Methylation

Molecular and Cellular Biology, 2005-06, Vol.25 (11), p.4552-4564

2005

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How open science can support the 3Rs and improve animal research

Research Ideas and Outcomes, 2023-08, Vol.9, p.e0230416-23

2023

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SigWinR; the SigWin-detector updated and ported to R

BMC research notes, 2009-10, Vol.2 (1), p.205-205

2009

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Absence/presence calling in microarray-based CGH experiments with non-model organisms

Nucleic acids research, 2014-06, Vol.42 (11), p.e94

2014

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Letter to the editor - round table unites to tackle culture change in an effort to improve animal research reporting

BMC veterinary research, 2017-11, Vol.13 (1), p.314-314, Article 314

2017

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Valuable lessons-learned in transcriptomics experimentation

Transcription, 2015-05, Vol.6 (3), p.51-55

2015

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Visualization and Analysis of Large Data Collections: a Case Study Applied to Confocal Microscopy Data

IEEE transactions on visualization and computer graphics, 2006-09, Vol.12 (5), p.1251-1258

2006

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Preregistration of animal research protocols: development and 3-year overview of preclinicaltrials.eu

BMJ open science, 2022-03, Vol.6 (1), p.e100259-e100259

2022

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GraphSplatting: visualizing graphs as continuous fields

IEEE transactions on visualization and computer graphics, 2003-04, Vol.9 (2), p.206-212

2003

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Improving small RNA-seq by using a synthetic spike-in set for size-range quality control together with a set for data normalization

Combining next-generation sequencing and microarray technology into a transcriptomics approach for the non-model organism Chironomus riparius

Transcriptome dynamics in early zebrafish embryogenesis determined by high-resolution time course analysis of 180 successive, individual zebrafish embryos

The dynamics of early-state transcriptional changes and aggregate formation in a Huntington's disease cell model

Gene Expression Patterns and Life Cycle Responses of Toxicant-Exposed Chironomids

The Effect of the Stringent Response and Oxidative Stress Response on Fitness Costs of De Novo Acquisition of Antibiotic Resistance

Salvaging Affymetrix probes after probe-level re-annotation

A 3-year evaluation of preclinicaltrials.eu reveals room for improvement in preregistration of animal studies

Spatially confined folding of chromatin in the interphase nucleus

Reactive oxygen species accelerate de novo acquisition of antibiotic resistance in E. coli

Integrating heterogeneous sequence information for transcriptome-wide microarray design; a Zebrafish example

Role of RelA-synthesized (p)ppGpp and ROS-induced mutagenesis in de novo acquisition of antibiotic resistance in E. coli

Genome Sequence of a New Carnation Small Viroid-Like RNA, CarSV-1

The Three-Dimensional Structure of Human Interphase Chromosomes Is Related to the Transcriptome Map

Genome sequences of 10 new carnation mottle virus variants

Transcriptome data on maternal RNA of 24 individual zebrafish eggs from five sibling mothers

In Vivo HP1 Targeting Causes Large-Scale Chromatin Condensation and Enhanced Histone Lysine Methylation

How open science can support the 3Rs and improve animal research

SigWinR; the SigWin-detector updated and ported to R

Absence/presence calling in microarray-based CGH experiments with non-model organisms

Letter to the editor - round table unites to tackle culture change in an effort to improve animal research reporting

Valuable lessons-learned in transcriptomics experimentation

Visualization and Analysis of Large Data Collections: a Case Study Applied to Confocal Microscopy Data

Preregistration of animal research protocols: development and 3-year overview of preclinicaltrials.eu

GraphSplatting: visualizing graphs as continuous fields

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