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Combined bacterial and fungal targeted amplicon sequencing of respiratory samples: Does the DNA extraction method matter?

PloS one, 2020-04, Vol.15 (4), p.e0232215-e0232215

2020

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Combined bacterial and fungal intestinal microbiota analyses: Impact of storage conditions and DNA extraction protocols

PloS one, 2018-08, Vol.13 (8), p.e0201174-e0201174

2018

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The Potential Role of Clinical Metagenomics in Infectious Diseases: Therapeutic Perspectives

Drugs (New York, N.Y.), 2021-09, Vol.81 (13), p.1453-1466

2021

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Detection of circulating DNA for the diagnosis of invasive fusariosis: retrospective analysis of 15 proven cases

Medical mycology (Oxford), 2022-09, Vol.60 (9)

2022

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Candida albicans Is Not Always the Preferential Yeast Colonizing Humans: A Study in Wayampi Amerindians

The Journal of infectious diseases, 2013-11, Vol.208 (10), p.1705-1716

2013

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Concomitant Presence of Aspergillus Species and Mycobacterium Species in the Respiratory Tract of Patients: Underestimated Co-occurrence?

Frontiers in microbiology, 2020-01, Vol.10, p.2980-2980

2020

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Diagnosis of mucormycosis using an intercalating dye-based quantitative PCR

Medical mycology (Oxford), 2022-03, Vol.60 (4)

2022

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Evaluation of the Bio-Evolution Microsporidia generic and typing real-time PCR assays for the diagnosis of intestinal microsporidiosis

Parasite (Paris), 2022, Vol.29 (55), p.55-55

2022

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Fungal and Bacterial Diversity of Airway Microbiota in Adults with Cystic Fibrosis: Concordance Between Conventional Methods and Ultra-Deep Sequencing, and Their Practical use in the Clinical Laboratory

Mycopathologia (1975), 2018-02, Vol.183 (1), p.171-183

2018

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Molecular Demonstration of a Pneumocystis Outbreak in Stem Cell Transplant Patients: Evidence for Transmission in the Daycare Center

Frontiers in microbiology, 2017-04, Vol.8, p.700-700

2017

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Assessment of the anthelmintic efficacy of albendazole in school children in seven countries where soil-transmitted helminths are endemic

PLoS neglected tropical diseases, 2011-03, Vol.5 (3), p.e948-e948

2011

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Massive Increase, Spread, and Exchange of Extended Spectrum β-Lactamase—Encoding Genes Among Intestinal Enterobacteriaceae in Hospitalized Children With Severe Acute Malnutrition in Niger

Clinical infectious diseases, 2011-10, Vol.53 (7), p.677-685

2011

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Analysis of Microbiota and Mycobiota in Fungal Ball Rhinosinusitis: Specific Interaction between Aspergillus fumigatus and Haemophilus influenza?

Journal of fungi (Basel), 2021-07, Vol.7 (7), p.550

2021

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Evolution of Nasal Carriage of Methicillin-Resistant Coagulase-Negative Staphylococci in a Remote Population

Antimicrobial Agents and Chemotherapy, 2012-01, Vol.56 (1), p.315-323

2012

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Metagenomics Applied to the Respiratory Mycobiome in Cystic Fibrosis

Mycopathologia (1975), 2024-10, Vol.189 (5), p.82, Article 82

2024

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Are host genetics the predominant determinant of persistent nasal Staphylococcus aureus carriage in humans?

The Journal of infectious diseases, 2010-09, Vol.202 (6), p.924-934

2010

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Risk factors for intra‐abdominal fungal infection after simultaneous pancreas‐kidney transplantation: A single‐center retrospective experience

Transplant infectious disease, 2021-04, Vol.23 (2), p.e13486-n/a

2021

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Emergence of Imipenem-Resistant Gram-Negative Bacilli in Intestinal Flora of Intensive Care Patients

Antimicrobial Agents and Chemotherapy, 2013-03, Vol.57 (3), p.1488-1495

2013

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Lack of 1-3-B-D-glucan detection in adults with bacteraemia

Medical mycology (Oxford), 2015-05, Vol.53 (4), p.405-408

2015

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Monitoring antibiotic-resistant enterobacteria faecal levels is helpful in predicting antibiotic susceptibility of bacteraemia isolates in patients with haematological malignancies

Journal of medical microbiology, 2015-07, Vol.64 (7), p.676-681

2015

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Le rôle du mycobiome en santé

Revue francophone des laboratoires, 2024, Vol.2024 (563), p.16-28

2024

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Emergence and Dissemination of Extended-Spectrum β-Lactamase-Producing Escherichia coli in the Community: Lessons from the Study of a Remote and Controlled Population

The Journal of infectious diseases, 2010-08, Vol.202 (4), p.515-523

2010

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Scedosporium species in soils from various biomes in Northwestern Morocco

PloS one, 2020-02, Vol.15 (2), p.e0228897-e0228897

2020

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Relative Fecal Abundance of Extended-Spectrum-β-Lactamase-Producing Escherichia coli Strains and Their Occurrence in Urinary Tract Infections in Women

Antimicrobial Agents and Chemotherapy, 2013-09, Vol.57 (9), p.4512-4517

2013

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Mucor irregularis-associated cutaneous mucormycosis: Case report and review

Medical mycology case reports, 2014-10, Vol.6 (C), p.62-65

2014

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Combined bacterial and fungal targeted amplicon sequencing of respiratory samples: Does the DNA extraction method matter?

Combined bacterial and fungal intestinal microbiota analyses: Impact of storage conditions and DNA extraction protocols

The Potential Role of Clinical Metagenomics in Infectious Diseases: Therapeutic Perspectives

Detection of circulating DNA for the diagnosis of invasive fusariosis: retrospective analysis of 15 proven cases

Candida albicans Is Not Always the Preferential Yeast Colonizing Humans: A Study in Wayampi Amerindians

Concomitant Presence of Aspergillus Species and Mycobacterium Species in the Respiratory Tract of Patients: Underestimated Co-occurrence?

Diagnosis of mucormycosis using an intercalating dye-based quantitative PCR

Evaluation of the Bio-Evolution Microsporidia generic and typing real-time PCR assays for the diagnosis of intestinal microsporidiosis

Fungal and Bacterial Diversity of Airway Microbiota in Adults with Cystic Fibrosis: Concordance Between Conventional Methods and Ultra-Deep Sequencing, and Their Practical use in the Clinical Laboratory

Molecular Demonstration of a Pneumocystis Outbreak in Stem Cell Transplant Patients: Evidence for Transmission in the Daycare Center

Assessment of the anthelmintic efficacy of albendazole in school children in seven countries where soil-transmitted helminths are endemic

Massive Increase, Spread, and Exchange of Extended Spectrum β-Lactamase—Encoding Genes Among Intestinal Enterobacteriaceae in Hospitalized Children With Severe Acute Malnutrition in Niger

Analysis of Microbiota and Mycobiota in Fungal Ball Rhinosinusitis: Specific Interaction between Aspergillus fumigatus and Haemophilus influenza?

Evolution of Nasal Carriage of Methicillin-Resistant Coagulase-Negative Staphylococci in a Remote Population

Metagenomics Applied to the Respiratory Mycobiome in Cystic Fibrosis

Are host genetics the predominant determinant of persistent nasal Staphylococcus aureus carriage in humans?

Risk factors for intra‐abdominal fungal infection after simultaneous pancreas‐kidney transplantation: A single‐center retrospective experience

Emergence of Imipenem-Resistant Gram-Negative Bacilli in Intestinal Flora of Intensive Care Patients

Lack of 1-3-B-D-glucan detection in adults with bacteraemia

Monitoring antibiotic-resistant enterobacteria faecal levels is helpful in predicting antibiotic susceptibility of bacteraemia isolates in patients with haematological malignancies

Le rôle du mycobiome en santé

Emergence and Dissemination of Extended-Spectrum β-Lactamase-Producing Escherichia coli in the Community: Lessons from the Study of a Remote and Controlled Population

Scedosporium species in soils from various biomes in Northwestern Morocco

Relative Fecal Abundance of Extended-Spectrum-β-Lactamase-Producing Escherichia coli Strains and Their Occurrence in Urinary Tract Infections in Women

Mucor irregularis-associated cutaneous mucormycosis: Case report and review

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