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Data-Driven Phenotypic Dissection of AML Reveals Progenitor-like Cells that Correlate with Prognosis

Cell, 2015-07, Vol.162 (1), p.184-197

2015

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A Continuous Molecular Roadmap to iPSC Reprogramming through Progression Analysis of Single-Cell Mass Cytometry

Cell stem cell, 2015-03, Vol.16 (3), p.323-337

2015

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Stem Cell Pluripotency Genes Klf4 and Oct4 Regulate Complex SMC Phenotypic Changes Critical in Late-Stage Atherosclerotic Lesion Pathogenesis

Circulation (New York, N.Y.), 2020-11, Vol.142 (21), p.2045-2059

2020

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Highly multiplexed simultaneous detection of RNAs and proteins in single cells

Nature methods, 2016-03, Vol.13 (3), p.269

2016

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The good, the bald, and the hairy: A mechanosensor meets its fate at the target

Developmental cell, 2023-10, Vol.58 (20), p.2013-2014

2023

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Multiplexed mass cytometry profiling of cellular states perturbed by small-molecule regulators

Nature biotechnology, 2012-09, Vol.30 (9), p.858-867

2012

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An interactive reference framework for modeling a dynamic immune system

Science (American Association for the Advancement of Science), 2015-07, Vol.349 (6244), p.155-155

2015

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Early reprogramming regulators identified by prospective isolation and mass cytometry

Nature (London), 2015-05, Vol.521 (7552), p.352-356

2015

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Cutting Edge: Critical Roles for Microbiota-Mediated Regulation of the Immune System in a Prenatal Immune Activation Model of Autism

The Journal of immunology (1950), 2018-08, Vol.201 (3), p.845-850

2018

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Palladium-based mass tag cell barcoding with a doublet-filtering scheme and single-cell deconvolution algorithm

Nature protocols, 2015-02, Vol.10 (2), p.316-333

2015

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Graphia: A platform for the graph-based visualisation and analysis of high dimensional data

PLoS computational biology, 2022-07, Vol.18 (7), p.e1010310-e1010310

2022

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HELIOS: High-speed sequence alignment in optics

PLoS computational biology, 2022-11, Vol.18 (11), p.e1010665

2022

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HiCImpute: A Bayesian hierarchical model for identifying structural zeros and enhancing single cell Hi-C data

PLoS computational biology, 2022-06, Vol.18 (6), p.e1010129-e1010129

2022

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Analytical kinetic model of native tandem promoters in E. coli

PLoS computational biology, 2022-01, Vol.18 (1), p.e1009824-e1009824

2022

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Direct comparison of mass cytometry and single-cell RNA sequencing of human peripheral blood mononuclear cells

Scientific data, 2024-05, Vol.11 (1), p.559-7, Article 559

2024

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Atomic mass tag of bismuth‐209 for increasing the immunoassay multiplexing capacity of mass cytometry

Cytometry. Part A, 2017-12, Vol.91 (12), p.1150-1163

2017

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IL-1β Inhibition Partially Negates the Beneficial Effects of Diet-Induced Atherosclerosis Regression in Mice

Arteriosclerosis, thrombosis, and vascular biology, 2024-06, Vol.44 (6), p.1379

2024

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Transient partial permeabilization with saponin enables cellular barcoding prior to surface marker staining

Cytometry. Part A, 2014-12, Vol.85 (12), p.1011-1019

2014

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A developmental atlas of somatosensory diversification and maturation in the dorsal root ganglia by single-cell mass cytometry

Nature neuroscience, 2022-11, Vol.25 (11), p.1543

2022

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Sexual dimorphism in the dorsal root ganglia of neonatal mice identified by protein expression profiling with single-cell mass cytometry

Molecular and cellular neuroscience, 2023-09, Vol.126, p.103866-103866, Article 103866

2023

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FLOW-MAP: a graph-based, force-directed layout algorithm for trajectory mapping in single-cell time course datasets

Nature protocols, 2020-02, Vol.15 (2), p.398-420

2020

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RUNX3 levels in human hematopoietic progenitors are regulated by aging and dictate erythroid-myeloid balance

Haematologica (Roma), 2020-04, Vol.105 (4), p.905

2020

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Discovery of Drug-Resistant and Drug-Sensitizing Mutations in the Oncogenic PI3K Isoform p110α

Cancer cell, 2008-08, Vol.14 (2), p.180-192

2008

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AN UPDATED DEBARCODING TOOL FOR MASS CYTOMETRY WITH CELL TYPE-SPECIFIC AND CELL SAMPLE-SPECIFIC STRINGENCY ADJUSTMENT

Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, 2017, Vol.22, p.588

2017

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BMP-6 promotes type 2 immune response during enhancement of rat mandibular bone defect healing

Frontiers in immunology, 2023-02, Vol.14, p.1064238-1064238

2023

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Data-Driven Phenotypic Dissection of AML Reveals Progenitor-like Cells that Correlate with Prognosis

A Continuous Molecular Roadmap to iPSC Reprogramming through Progression Analysis of Single-Cell Mass Cytometry

Stem Cell Pluripotency Genes Klf4 and Oct4 Regulate Complex SMC Phenotypic Changes Critical in Late-Stage Atherosclerotic Lesion Pathogenesis

Highly multiplexed simultaneous detection of RNAs and proteins in single cells

The good, the bald, and the hairy: A mechanosensor meets its fate at the target

Multiplexed mass cytometry profiling of cellular states perturbed by small-molecule regulators

An interactive reference framework for modeling a dynamic immune system

Early reprogramming regulators identified by prospective isolation and mass cytometry

Cutting Edge: Critical Roles for Microbiota-Mediated Regulation of the Immune System in a Prenatal Immune Activation Model of Autism

Palladium-based mass tag cell barcoding with a doublet-filtering scheme and single-cell deconvolution algorithm

Graphia: A platform for the graph-based visualisation and analysis of high dimensional data

HELIOS: High-speed sequence alignment in optics

HiCImpute: A Bayesian hierarchical model for identifying structural zeros and enhancing single cell Hi-C data

Analytical kinetic model of native tandem promoters in E. coli

Direct comparison of mass cytometry and single-cell RNA sequencing of human peripheral blood mononuclear cells

Atomic mass tag of bismuth‐209 for increasing the immunoassay multiplexing capacity of mass cytometry

IL-1β Inhibition Partially Negates the Beneficial Effects of Diet-Induced Atherosclerosis Regression in Mice

Transient partial permeabilization with saponin enables cellular barcoding prior to surface marker staining

A developmental atlas of somatosensory diversification and maturation in the dorsal root ganglia by single-cell mass cytometry

Sexual dimorphism in the dorsal root ganglia of neonatal mice identified by protein expression profiling with single-cell mass cytometry

FLOW-MAP: a graph-based, force-directed layout algorithm for trajectory mapping in single-cell time course datasets

RUNX3 levels in human hematopoietic progenitors are regulated by aging and dictate erythroid-myeloid balance

Discovery of Drug-Resistant and Drug-Sensitizing Mutations in the Oncogenic PI3K Isoform p110α

AN UPDATED DEBARCODING TOOL FOR MASS CYTOMETRY WITH CELL TYPE-SPECIFIC AND CELL SAMPLE-SPECIFIC STRINGENCY ADJUSTMENT

BMP-6 promotes type 2 immune response during enhancement of rat mandibular bone defect healing

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