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DNA Sequence-Dependent Deformability Deduced from Protein-DNA Crystal Complexes

Proceedings of the National Academy of Sciences - PNAS, 1998-09, Vol.95 (19), p.11163-11168

1998

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Sequence-Dependent B↔A Transition in DNA Evaluated with Dimeric and Trimeric Scales

Biophysical journal, 2001-12, Vol.81 (6), p.3409-3421

2001

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Static and Statistical Bending of DNA Evaluated by Monte Carlo Simulations

Proceedings of the National Academy of Sciences - PNAS, 1991-08, Vol.88 (16), p.7046-7050

1991

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A Parallel DNA Triplex as model for the Intermediate in Homologous Recombination

Journal of molecular biology, 1994-06, Vol.239 (2), p.181-200

1994

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Modeling DNA deformations

Current Opinion in Structural Biology, 2000-06, Vol.10 (3), p.286-297

2000

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Protein–DNA Hydrophobic Recognition in the Minor Groove is Facilitated by Sugar Switching

Journal of molecular biology, 2004-03, Vol.337 (1), p.65-76

2004

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Rotational positioning of nucleosomes facilitates selective binding of p53 to response elements associated with cell cycle arrest

Nucleic acids research, 2014-01, Vol.42 (2), p.836-847

2014

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Influence of Fluctuations on DNA Curvature: A Comparison of Flexible and Static Wedge Models of Intrinsically Bent DNA

Journal of molecular biology, 1993-07, Vol.232 (2), p.530-554

1993

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Gal repressosome contains an antiparallel DNA loop

Nature structural & molecular biology, 2001-05, Vol.8 (5), p.432-436

2001

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Structural Basis for SRY-dependent 46-X,Y Sex Reversal: Modulation of DNA Bending by a Naturally Occurring Point Mutation

Journal of molecular biology, 2001-09, Vol.312 (3), p.481-499

2001

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B-DNA Twisting Correlates with Base-pair Morphology

Journal of molecular biology, 1995-03, Vol.247 (1), p.34-48

1995

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A Novel Roll-and-Slide Mechanism of DNA Folding in Chromatin: Implications for Nucleosome Positioning

Journal of molecular biology, 2007-08, Vol.371 (3), p.725-738

2007

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DNA stretching and compression: large-scale simulations of double helical structures

Journal of molecular biology, 1999-06, Vol.289 (5), p.1301-1326

1999

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“Antiparallel” DNA Loop in Gal Repressosome Visualized by Atomic Force Microscopy

Journal of molecular biology, 2003-11, Vol.334 (1), p.53-63

2003

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p53-Induced DNA Bending and Twisting: p53 Tetramer Binds on the Outer Side of a DNA Loop and Increases DNA Twisting

Proceedings of the National Academy of Sciences - PNAS, 1999-03, Vol.96 (5), p.1875-1880

1999

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Systematic study of nuclear Overhauser effects vis-a-vis local helical parameters, sugar puckers, and glycosidic torsions in B DNA; insensitivity of NOE to local transitions in B DNA oligonucleotides due to internal structural compensations

Biochemistry (Easton), 1992-04, Vol.31 (16), p.3918-3930

1992

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Formation of an intramolecular triple-stranded DNA structure monitored by fluorescence of 2-aminopurine or 6-methylisoxanthopterin

Nucleic acids research, 2004-01, Vol.32 (2), p.432-440

2004

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DNA and RNA Folds in Transcription Complex as Evidenced by Iodine-125 Radioprobing

Journal of biomolecular structure & dynamics, 2000-01, Vol.17 (sup1), p.155-167

2000

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CAP Binding Sites Reveal Pyrimidine-Purine Pattern Characteristic of DNA Bending

Journal of biomolecular structure & dynamics, 1990-10, Vol.8 (2), p.213-232

1990

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Detecting the DNA kinks in a DNA-CRP complex in solution with iodine-125 radioprobing

Nature structural biology, 1999-08, Vol.6 (8), p.747-750

1999

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Architectural Accommodation in the Complex of Four p53 DNA Binding Domain Peptides with the p21/waf1/cip1 DNA Response Element

The Journal of biological chemistry, 1997-06, Vol.272 (23), p.14830-14841

1997

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Radioprobing of a RecA-three-stranded DNA complex with iodine 125: evidence for recognition of homology in the major groove of the target duplex

Journal of molecular biology, 2000-06, Vol.299 (3), p.629-640

2000

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Decreased interstrand H2-H1' distance in the GC-rich part of the duplex d(CCTCAAACTCC).d(GGAGTTTGAGG) in solution at low temperature : proton nuclear magnetic resonance investigation

Biochemistry (Easton), 1993-07, Vol.32 (27), p.6875-6883

1993

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A role for CH…O interactions in protein-DNA recognition

Journal of molecular biology, 1998-04, Vol.277 (5), p.1129-1140

1998

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DNA Mechanics, Nucleosome Positioning and p53-DNA Recognition

Journal of biomolecular structure & dynamics, 2011-06, Vol.28 (6), p.1158-1159

2011

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DNA Sequence-Dependent Deformability Deduced from Protein-DNA Crystal Complexes

Sequence-Dependent B↔A Transition in DNA Evaluated with Dimeric and Trimeric Scales

Static and Statistical Bending of DNA Evaluated by Monte Carlo Simulations

A Parallel DNA Triplex as model for the Intermediate in Homologous Recombination

Modeling DNA deformations

Protein–DNA Hydrophobic Recognition in the Minor Groove is Facilitated by Sugar Switching

Rotational positioning of nucleosomes facilitates selective binding of p53 to response elements associated with cell cycle arrest

Influence of Fluctuations on DNA Curvature: A Comparison of Flexible and Static Wedge Models of Intrinsically Bent DNA

Gal repressosome contains an antiparallel DNA loop

Structural Basis for SRY-dependent 46-X,Y Sex Reversal: Modulation of DNA Bending by a Naturally Occurring Point Mutation

B-DNA Twisting Correlates with Base-pair Morphology

A Novel Roll-and-Slide Mechanism of DNA Folding in Chromatin: Implications for Nucleosome Positioning

DNA stretching and compression: large-scale simulations of double helical structures

“Antiparallel” DNA Loop in Gal Repressosome Visualized by Atomic Force Microscopy

p53-Induced DNA Bending and Twisting: p53 Tetramer Binds on the Outer Side of a DNA Loop and Increases DNA Twisting

Systematic study of nuclear Overhauser effects vis-a-vis local helical parameters, sugar puckers, and glycosidic torsions in B DNA; insensitivity of NOE to local transitions in B DNA oligonucleotides due to internal structural compensations

Formation of an intramolecular triple-stranded DNA structure monitored by fluorescence of 2-aminopurine or 6-methylisoxanthopterin

DNA and RNA Folds in Transcription Complex as Evidenced by Iodine-125 Radioprobing

CAP Binding Sites Reveal Pyrimidine-Purine Pattern Characteristic of DNA Bending

Detecting the DNA kinks in a DNA-CRP complex in solution with iodine-125 radioprobing

Architectural Accommodation in the Complex of Four p53 DNA Binding Domain Peptides with the p21/waf1/cip1 DNA Response Element

Radioprobing of a RecA-three-stranded DNA complex with iodine 125: evidence for recognition of homology in the major groove of the target duplex

Decreased interstrand H2-H1' distance in the GC-rich part of the duplex d(CCTCAAACTCC).d(GGAGTTTGAGG) in solution at low temperature : proton nuclear magnetic resonance investigation

A role for CH…O interactions in protein-DNA recognition

DNA Mechanics, Nucleosome Positioning and p53-DNA Recognition

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