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Integrating unsupervised language model with triplet neural networks for protein gene ontology prediction

PLoS computational biology, 2022-12, Vol.18 (12), p.e1010793-e1010793

2022

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ULDNA: integrating unsupervised multi-source language models with LSTM-attention network for high-accuracy protein–DNA binding site prediction

Briefings in bioinformatics, 2024-01, Vol.25 (2)

2024

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MAResNet: predicting transcription factor binding sites by combining multi-scale bottom-up and top-down attention and residual network

Briefings in bioinformatics, 2022-01, Vol.23 (1)

2022

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Integrating unsupervised language model with multi-view multiple sequence alignments for high-accuracy inter-chain contact prediction

Computers in biology and medicine, 2023-11, Vol.166, p.107529-107529, Article 107529

2023

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MutTMPredictor: Robust and accurate cascade XGBoost classifier for prediction of mutations in transmembrane proteins

Computational and structural biotechnology journal, 2021-01, Vol.19, p.6400-6416

2021

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TripletGO: Integrating Transcript Expression Profiles with Protein Homology Inferences for Gene Function Prediction

Genomics, proteomics & bioinformatics, 2022-10, Vol.20 (5), p.1013-1027

2022

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DNAPred: Accurate Identification of DNA-Binding Sites from Protein Sequence by Ensembled Hyperplane-Distance-Based Support Vector Machines

Journal of chemical information and modeling, 2019-06, Vol.59 (6), p.3057-3071

2019

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GCmapCrys: Integrating graph attention network with predicted contact map for multi-stage protein crystallization propensity prediction

Analytical biochemistry, 2023-02, Vol.663, p.115020-115020, Article 115020

2023

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Why can deep convolutional neural networks improve protein fold recognition? A visual explanation by interpretation

Briefings in bioinformatics, 2021-09, Vol.22 (5)

2021

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TargetDBP: Accurate DNA-Binding Protein Prediction Via Sequence-Based Multi-View Feature Learning

IEEE/ACM transactions on computational biology and bioinformatics, 2020-07, Vol.17 (4), p.1419-1429

2020

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Accurate multistage prediction of protein crystallization propensity using deep-cascade forest with sequence-based features

Briefings in bioinformatics, 2021-05, Vol.22 (3)

2021

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Improving protein fold recognition using triplet network and ensemble deep learning

Briefings in bioinformatics, 2021-11, Vol.22 (6)

2021

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SSCpred: Single-Sequence-Based Protein Contact Prediction Using Deep Fully Convolutional Network

Journal of chemical information and modeling, 2020-06, Vol.60 (6), p.3295-3303

2020

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TargetDBP+: Enhancing the Performance of Identifying DNA-Binding Proteins via Weighted Convolutional Features

Journal of chemical information and modeling, 2021-01, Vol.61 (1), p.505-515

2021

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DeepTF: Accurate Prediction of Transcription Factor Binding Sites by Combining Multi-scale Convolution and Long Short-Term Memory Neural Network

Intelligence Science and Big Data Engineering. Big Data and Machine Learning, 2019, Vol.11936, p.126-138

2019

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A new method for predicting anterior chamber depth in intraocular lens implantation

Nan fang yi ke da xue xue bao = Journal of Southern Medical University, 2011-11, Vol.31 (11), p.1895

2011

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BLAM6A-Merge: Leveraging Attention Mechanisms and Feature Fusion Strategies to Improve the Identification of RNA N6-methyladenosine Sites

IEEE/ACM transactions on computational biology and bioinformatics, 2024-06, Vol.PP, p.1-14

2024

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Charged residues render pro-OmpA potential dependent for initiation of membrane translocation

The Journal of biological chemistry, 1993-05, Vol.268 (13), p.9442-9447

1993

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Evidence for a Loop‐Like Insertion Mechanism of Pro‐Omp A into the Inner Membrane of Escherichia Coli

European journal of biochemistry, 1994-12, Vol.226 (3), p.891-897

1994

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Protein Array-based Approaches for BiomarkerDiscovery in Cancer

基因组蛋白质组与生物信息学报：英文版, 2017, Vol.15 (2), p.73-81

Yi Huang Heng Zhu

2017

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Efficient translocation of positively charged residues of M13 procoat protein across the membrane excludes electrophoresis as the primary force for membrane insertion

The EMBO journal, 1990-08, Vol.9 (8), p.2385-2389

1990

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Construction of a New Molecular Barcode for Discriminating Plants and Animals with a Close Genetic Relationship

Journal of Integrative Agriculture, 2013-07, Vol.12 (7), p.1138-1151

2013

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Protective effect of DNA vaccine with the gene encoding 55kDa antigen fragment against Pneumocystis carinii in mice

Asian Pacific journal of tropical medicine, 2011-05, Vol.4 (5), p.353-356

2011

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Mapping of catalytically important domains in Escherichia coli leader peptidase

The EMBO journal, 1990-09, Vol.9 (9), p.2717-2722

1990

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Enzymatic Electrosynthesis of Glycine from CO2 and NH3

Angewandte Chemie International Edition, 2023-03, Vol.62 (14), p.e202218387-n/a

International ed. in English, 2023

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Integrating unsupervised language model with triplet neural networks for protein gene ontology prediction

ULDNA: integrating unsupervised multi-source language models with LSTM-attention network for high-accuracy protein–DNA binding site prediction

MAResNet: predicting transcription factor binding sites by combining multi-scale bottom-up and top-down attention and residual network

Integrating unsupervised language model with multi-view multiple sequence alignments for high-accuracy inter-chain contact prediction

MutTMPredictor: Robust and accurate cascade XGBoost classifier for prediction of mutations in transmembrane proteins

TripletGO: Integrating Transcript Expression Profiles with Protein Homology Inferences for Gene Function Prediction

DNAPred: Accurate Identification of DNA-Binding Sites from Protein Sequence by Ensembled Hyperplane-Distance-Based Support Vector Machines

GCmapCrys: Integrating graph attention network with predicted contact map for multi-stage protein crystallization propensity prediction

Why can deep convolutional neural networks improve protein fold recognition? A visual explanation by interpretation

TargetDBP: Accurate DNA-Binding Protein Prediction Via Sequence-Based Multi-View Feature Learning

Accurate multistage prediction of protein crystallization propensity using deep-cascade forest with sequence-based features

Improving protein fold recognition using triplet network and ensemble deep learning

SSCpred: Single-Sequence-Based Protein Contact Prediction Using Deep Fully Convolutional Network

TargetDBP+: Enhancing the Performance of Identifying DNA-Binding Proteins via Weighted Convolutional Features

DeepTF: Accurate Prediction of Transcription Factor Binding Sites by Combining Multi-scale Convolution and Long Short-Term Memory Neural Network

A new method for predicting anterior chamber depth in intraocular lens implantation

BLAM6A-Merge: Leveraging Attention Mechanisms and Feature Fusion Strategies to Improve the Identification of RNA N6-methyladenosine Sites

Charged residues render pro-OmpA potential dependent for initiation of membrane translocation

Evidence for a Loop‐Like Insertion Mechanism of Pro‐Omp A into the Inner Membrane of Escherichia Coli

Protein Array-based Approaches for BiomarkerDiscovery in Cancer

Efficient translocation of positively charged residues of M13 procoat protein across the membrane excludes electrophoresis as the primary force for membrane insertion

Construction of a New Molecular Barcode for Discriminating Plants and Animals with a Close Genetic Relationship

Protective effect of DNA vaccine with the gene encoding 55kDa antigen fragment against Pneumocystis carinii in mice

Mapping of catalytically important domains in Escherichia coli leader peptidase

Enzymatic Electrosynthesis of Glycine from CO2 and NH3

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