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Deletion and replacement of long genomic sequences using prime editing

Nature biotechnology, 2022-02, Vol.40 (2), p.227-234

2022

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The piRNA targeting rules and the resistance to piRNA silencing in endogenous genes

Science (American Association for the Advancement of Science), 2018-02, Vol.359 (6375), p.587-592

2018

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ZDOCK server: interactive docking prediction of protein-protein complexes and symmetric multimers

Bioinformatics (Oxford, England), 2014-06, Vol.30 (12), p.1771-1773

2014

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YAP and TAZ are transcriptional co-activators of AP-1 proteins and STAT3 during breast cellular transformation

eLife, 2021-08, Vol.10

2021

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Regulation of histone H3K4 methylation in brain development and disease

Philosophical transactions of the Royal Society of London. Series B. Biological sciences, 2014-09, Vol.369 (1652), p.20130514

2014

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Protein-protein docking benchmark version 4.0

Proteins, structure, function, and bioinformatics, 2010-11, Vol.78 (15), p.3111-3114

2010

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Accelerating protein docking in ZDOCK using an advanced 3D convolution library

PloS one, 2011-09, Vol.6 (9), p.e24657-e24657

2011

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TEMP: a computational method for analyzing transposable element polymorphism in populations

Nucleic acids research, 2014-06, Vol.42 (11), p.6826-6838

2014

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piRNA-guided transposon cleavage initiates Zucchini-dependent, phased piRNA production

Science (American Association for the Advancement of Science), 2015-05, Vol.348 (6236), p.817-821

2015

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The correlation between histone modifications and gene expression

Epigenomics, 2013-04, Vol.5 (2), p.113-116

2013

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Chemical modifications of adenine base editor mRNA and guide RNA expand its application scope

Nature communications, 2020-04, Vol.11 (1), p.1979-1979, Article 1979

2020

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Genome-wide analysis of polymerase III-transcribed Alu elements suggests cell-type-specific enhancer function

Genome research, 2019-09, Vol.29 (9), p.1402-1414

2019

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Unsupervised pattern discovery in human chromatin structure through genomic segmentation

Nature methods, 2012-05, Vol.9 (5), p.473-476

2012

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DNApi: A De Novo Adapter Prediction Algorithm for Small RNA Sequencing Data

PloS one, 2016-10, Vol.11 (10), p.e0164228-e0164228

2016

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Elimination of PCR duplicates in RNA-seq and small RNA-seq using unique molecular identifiers

BMC genomics, 2018-07, Vol.19 (1), p.531-531, Article 531

2018

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A curated benchmark of enhancer-gene interactions for evaluating enhancer-target gene prediction methods

Genome Biology, 2020-01, Vol.21 (1), p.17-17, Article 17

2020

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Identification of piRNA Binding Sites Reveals the Argonaute Regulatory Landscape of the C. elegans Germline

Cell, 2018-02, Vol.172 (5), p.937-951.e18

2018

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The evolutionarily conserved piRNA-producing locus pi6 is required for male mouse fertility

Nature genetics, 2020-07, Vol.52 (7), p.728-739

2020

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Liquid chromatin Hi-C characterizes compartment-dependent chromatin interaction dynamics

Nature genetics, 2021-03, Vol.53 (3), p.367-378

2021

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Adenovirus-Mediated Somatic Genome Editing of Pten by CRISPR/Cas9 in Mouse Liver in Spite of Cas9-Specific Immune Responses

Human gene therapy, 2015-07, Vol.26 (7), p.432-442

2015

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Therapeutic genome editing by combined viral and non-viral delivery of CRISPR system components in vivo

Nature biotechnology, 2016-03, Vol.34 (3), p.328-333

2016

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piPipes: a set of pipelines for piRNA and transposon analysis via small RNA-seq, RNA-seq, degradome- and CAGE-seq, ChIP-seq and genomic DNA sequencing

Bioinformatics (Oxford, England), 2015-02, Vol.31 (4), p.593-595

2015

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A combination of rescoring and refinement significantly improves protein docking performance

Proteins, structure, function, and bioinformatics, 2008-07, Vol.72 (1), p.270-279

2008

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Long first exons and epigenetic marks distinguish conserved pachytene piRNA clusters from other mammalian genes

Nature communications, 2021-01, Vol.12 (1), p.73-73, Article 73

2021

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Updates to the Integrated Protein–Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2

Journal of molecular biology, 2015-09, Vol.427 (19), p.3031-3041

2015

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Deletion and replacement of long genomic sequences using prime editing

The piRNA targeting rules and the resistance to piRNA silencing in endogenous genes

ZDOCK server: interactive docking prediction of protein-protein complexes and symmetric multimers

YAP and TAZ are transcriptional co-activators of AP-1 proteins and STAT3 during breast cellular transformation

Regulation of histone H3K4 methylation in brain development and disease

Protein-protein docking benchmark version 4.0

Accelerating protein docking in ZDOCK using an advanced 3D convolution library

TEMP: a computational method for analyzing transposable element polymorphism in populations

piRNA-guided transposon cleavage initiates Zucchini-dependent, phased piRNA production

The correlation between histone modifications and gene expression

Chemical modifications of adenine base editor mRNA and guide RNA expand its application scope

Genome-wide analysis of polymerase III-transcribed Alu elements suggests cell-type-specific enhancer function

Unsupervised pattern discovery in human chromatin structure through genomic segmentation

DNApi: A De Novo Adapter Prediction Algorithm for Small RNA Sequencing Data

Elimination of PCR duplicates in RNA-seq and small RNA-seq using unique molecular identifiers

A curated benchmark of enhancer-gene interactions for evaluating enhancer-target gene prediction methods

Identification of piRNA Binding Sites Reveals the Argonaute Regulatory Landscape of the C. elegans Germline

The evolutionarily conserved piRNA-producing locus pi6 is required for male mouse fertility

Liquid chromatin Hi-C characterizes compartment-dependent chromatin interaction dynamics

Adenovirus-Mediated Somatic Genome Editing of Pten by CRISPR/Cas9 in Mouse Liver in Spite of Cas9-Specific Immune Responses

Therapeutic genome editing by combined viral and non-viral delivery of CRISPR system components in vivo

piPipes: a set of pipelines for piRNA and transposon analysis via small RNA-seq, RNA-seq, degradome- and CAGE-seq, ChIP-seq and genomic DNA sequencing

A combination of rescoring and refinement significantly improves protein docking performance

Long first exons and epigenetic marks distinguish conserved pachytene piRNA clusters from other mammalian genes

Updates to the Integrated Protein–Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2

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