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Deep representation learning of patient data from Electronic Health Records (EHR): A systematic review

Journal of biomedical informatics, 2021-03, Vol.115, p.103671-103671, Article 103671

2021

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Informatics, Data Science, and Artificial Intelligence

JAMA : the journal of the American Medical Association, 2018-09, Vol.320 (11), p.1103

2018

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Enhancing Hi-C data resolution with deep convolutional neural network HiCPlus

Nature communications, 2018-02, Vol.9 (1), p.750-9, Article 750

2018

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SAFER: sub-hypergraph attention-based neural network for predicting effective responses to dose combinations

BMC bioinformatics, 2024-07, Vol.25 (1), p.250-19, Article 250

2024

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Molecular profiling of multiple human cancers defines an inflammatory cancer-associated molecular pattern and uncovers KPNA2 as a uniform poor prognostic cancer marker

PloS one, 2013-03, Vol.8 (3), p.e57911-e57911

2013

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A transformation-based method for auditing the IS-A hierarchy of biomedical terminologies in the Unified Medical Language System

Journal of the American Medical Informatics Association : JAMIA, 2020-10, Vol.27 (10), p.1568-1575

2020

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Asthma Exacerbation Prediction and Risk Factor Analysis Based on a Time-Sensitive, Attentive Neural Network: Retrospective Cohort Study

Journal of medical Internet research, 2020-07, Vol.22 (7), p.e16981-e16981

2020

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Global skin gene expression analysis of early diffuse cutaneous systemic sclerosis shows a prominent innate and adaptive inflammatory profile

Annals of the rheumatic diseases, 2020-03, Vol.79 (3), p.379-386

2020

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Presence of complete murine viral genome sequences in patient-derived xenografts

Nature communications, 2021-04, Vol.12 (1), p.2031-2031, Article 2031

2021

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Developing deep learning-based strategies to predict the risk of hepatocellular carcinoma among patients with nonalcoholic fatty liver disease from electronic health records

Journal of biomedical informatics, 2024-04, Vol.152, p.104626-104626, Article 104626

2024

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HSC-independent definitive hematopoiesis persists into adult life

Cell reports (Cambridge), 2023-03, Vol.42 (3), p.112239-112239, Article 112239

2023

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Gene fingerprint model for literature based detection of the associations among complex diseases: a case study of COPD

BMC medical informatics and decision making, 2019-01, Vol.19 (Suppl 1), p.20-9, Article 20

2019

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PleThora: Pleural effusion and thoracic cavity segmentations in diseased lungs for benchmarking chest CT processing pipelines

Medical physics (Lancaster), 2020-11, Vol.47 (11), p.5941-5952

2020

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The International Conference on Intelligent Biology and Medicine (ICIBM) 2016: summary and innovation in genomics

BMC genomics, 2017-10, Vol.18 (Suppl 6), p.703-703, Article 703

2017

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Subgingival Microbiome and Specialized Pro-Resolving Lipid Mediator Pathway Profiles Are Correlated in Periodontal Inflammation

Frontiers in immunology, 2021-06, Vol.12, p.691216-691216

2021

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Distinct Profiles of Specialized Pro-resolving Lipid Mediators and Corresponding Receptor Gene Expression in Periodontal Inflammation

Frontiers in immunology, 2020-06, Vol.11, p.1307-1307

2020

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Gene expression dynamic analysis reveals co-activation of Sonic Hedgehog and epidermal growth factor followed by dynamic silencing

Oncotarget, 2020-04, Vol.11 (15), p.1358-1372

2020

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The IL6/JAK/STAT3 signaling axis is a therapeutic vulnerability in SMARCB1-deficient bladder cancer

Nature communications, 2024-02, Vol.15 (1), p.1373-1373, Article 1373

2024

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Yeast Sphingolipid Phospholipase Gene ISC1 Regulates the Spindle Checkpoint by a CDC55-Dependent Mechanism

Molecular and cellular biology, 2020-05, Vol.40 (12)

2020

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Evidence for craniofacial enhancer variation underlying nonsyndromic cleft lip and palate

Human genetics, 2020-10, Vol.139 (10), p.1261-1272

2020

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β-Arrestin-Selective G Protein-Coupled Receptor Agonists Engender Unique Biological Efficacy in Vivo

Molecular endocrinology (Baltimore, Md.), 2013-02, Vol.27 (2), p.296-314

2013

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Reshaping the tumor microenvironment with oncolytic viruses, positive regulation of the immune synapse, and blockade of the immunosuppressive oncometabolic circuitry

Journal for immunotherapy of cancer, 2022-07, Vol.10 (7), p.e004935

2022

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The International Conference on Intelligent Biology and Medicine (ICIBM) 2016: from big data to big analytical tools

BMC bioinformatics, 2017-10, Vol.18 (Suppl 11), p.405-405, Article 405

2017

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An informatics research platform to make public gene expression time-course datasets reusable for more scientific discoveries

Database : the journal of biological databases and curation, 2020-11, Vol.2020

2020

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Virome assembly and annotation in brain tissue based on next‐generation sequencing

Cancer medicine (Malden, MA), 2020-09, Vol.9 (18), p.6776-6790

2020

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Deep representation learning of patient data from Electronic Health Records (EHR): A systematic review

Informatics, Data Science, and Artificial Intelligence

Enhancing Hi-C data resolution with deep convolutional neural network HiCPlus

SAFER: sub-hypergraph attention-based neural network for predicting effective responses to dose combinations

Molecular profiling of multiple human cancers defines an inflammatory cancer-associated molecular pattern and uncovers KPNA2 as a uniform poor prognostic cancer marker

A transformation-based method for auditing the IS-A hierarchy of biomedical terminologies in the Unified Medical Language System

Asthma Exacerbation Prediction and Risk Factor Analysis Based on a Time-Sensitive, Attentive Neural Network: Retrospective Cohort Study

Global skin gene expression analysis of early diffuse cutaneous systemic sclerosis shows a prominent innate and adaptive inflammatory profile

Presence of complete murine viral genome sequences in patient-derived xenografts

Developing deep learning-based strategies to predict the risk of hepatocellular carcinoma among patients with nonalcoholic fatty liver disease from electronic health records

HSC-independent definitive hematopoiesis persists into adult life

Gene fingerprint model for literature based detection of the associations among complex diseases: a case study of COPD

PleThora: Pleural effusion and thoracic cavity segmentations in diseased lungs for benchmarking chest CT processing pipelines

The International Conference on Intelligent Biology and Medicine (ICIBM) 2016: summary and innovation in genomics

Subgingival Microbiome and Specialized Pro-Resolving Lipid Mediator Pathway Profiles Are Correlated in Periodontal Inflammation

Distinct Profiles of Specialized Pro-resolving Lipid Mediators and Corresponding Receptor Gene Expression in Periodontal Inflammation

Gene expression dynamic analysis reveals co-activation of Sonic Hedgehog and epidermal growth factor followed by dynamic silencing

The IL6/JAK/STAT3 signaling axis is a therapeutic vulnerability in SMARCB1-deficient bladder cancer

Yeast Sphingolipid Phospholipase Gene ISC1 Regulates the Spindle Checkpoint by a CDC55-Dependent Mechanism

Evidence for craniofacial enhancer variation underlying nonsyndromic cleft lip and palate

β-Arrestin-Selective G Protein-Coupled Receptor Agonists Engender Unique Biological Efficacy in Vivo

Reshaping the tumor microenvironment with oncolytic viruses, positive regulation of the immune synapse, and blockade of the immunosuppressive oncometabolic circuitry

The International Conference on Intelligent Biology and Medicine (ICIBM) 2016: from big data to big analytical tools

An informatics research platform to make public gene expression time-course datasets reusable for more scientific discoveries

Virome assembly and annotation in brain tissue based on next‐generation sequencing

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