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Alternative splicing, RNA-seq and drug discovery

Drug discovery today, 2019-06, Vol.24 (6), p.1258-1267

Zhao, Shanrong

2019

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Misuse of RPKM or TPM normalization when comparing across samples and sequencing protocols

RNA (Cambridge), 2020-08, Vol.26 (8), p.903-909

2020

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Applications of machine learning in drug discovery and development

Nature reviews. Drug discovery, 2019-06, Vol.18 (6), p.463-477

2019

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Assessment of the impact of using a reference transcriptome in mapping short RNA-Seq reads

PloS one, 2014-07, Vol.9 (7), p.e101374-e101374

2014

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Shock-deformed zircon from the Chicxulub impact crater and implications for cratering process

Geology (Boulder), 2021-04

2021

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Comparison of RNA-Seq and microarray in transcriptome profiling of activated T cells

PloS one, 2014-01, Vol.9 (1), p.e78644-e78644

2014

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Single-cell analyses of Crohn's disease tissues reveal intestinal intraepithelial T cells heterogeneity and altered subset distributions

Nature communications, 2021-03, Vol.12 (1), p.1921-1921, Article 1921

2021

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Evaluation of two main RNA-seq approaches for gene quantification in clinical RNA sequencing: polyA+ selection versus rRNA depletion

Scientific reports, 2018-03, Vol.8 (1), p.4781-12, Article 4781

2018

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Evaluation and comparison of computational tools for RNA-seq isoform quantification

BMC genomics, 2017-08, Vol.18 (1), p.583-583, Article 583

2017

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Crystallographic orientation relationships between quartz and feldspar in myrmekite; a case study in monzodiorite from Meichuan Pluton, China

Mineralogical magazine, 2021-06, Vol.85 (3), p.406-415

2021

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Subsets of ILC3-ILC1-like cells generate a diversity spectrum of innate lymphoid cells in human mucosal tissues

Nature immunology, 2019-08, Vol.20 (8), p.980-991

2019

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RORγt and RORα signature genes in human Th17 cells

PloS one, 2017-08, Vol.12 (8), p.e0181868

2017

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Nanoscale constraints on the nucleation and evolution of granular zircon from reidite in impactites at the Chicxulub impact structure

Earth and planetary science letters, 2024-01, Vol.626, p.118507, Article 118507

2024

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Standard machine learning approaches outperform deep representation learning on phenotype prediction from transcriptomics data

BMC bioinformatics, 2020-03, Vol.21 (1), p.119-119, Article 119

2020

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Union Exon Based Approach for RNA-Seq Gene Quantification: To Be or Not to Be?

PloS one, 2015-11, Vol.10 (11), p.e0141910-e0141910

2015

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Comparison of stranded and non-stranded RNA-seq transcriptome profiling and investigation of gene overlap

BMC genomics, 2015-09, Vol.16 (1), p.675-675, Article 675

2015

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Hematite Exsolutions in Corundum from Cenozoic Basalts in Changle, Shandong Province, China: Crystallographic Orientation Relationships and Interface Characters

Crystals (Basel), 2022-07, Vol.12 (7), p.905

2022

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A comprehensive evaluation of ensembl, RefSeq, and UCSC annotations in the context of RNA-seq read mapping and gene quantification

BMC genomics, 2015-02, Vol.16 (1), p.97-97, Article 97

2015

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A protein kinase C α and β inhibitor blunts hyperphagia to halt renal function decline and reduces adiposity in a rat model of obesity-driven type 2 diabetes

Scientific reports, 2023-10, Vol.13 (1), p.16919-16919, Article 16919

2023

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Crystallographic evidence for simultaneous growth in graphic granite

Gondwana research, 2015-06, Vol.27 (4), p.1550-1559

2015

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Publisher Correction: Subsets of ILC3−ILC1-like cells generate a diversity spectrum of innate lymphoid cells in human mucosal tissues

Nature immunology, 2019-10, Vol.20 (10), p.1405-1405

2019

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High resolution molecular and histological analysis of renal disease progression in ZSF1 fa/faCP rats, a model of type 2 diabetic nephropathy

PloS one, 2017, Vol.12 (7), p.e0181861-e0181861

2017

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canvasDesigner: a versatile interactive high-resolution scientific multi-panel visualization toolkit

Bioinformatics, 2018-10, Vol.34 (19), p.3419-3420

2018

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The study on the shortcut approach for cooperative disposal of arsenic-rich copper dust and waste acid to prepare high-purity copper

Journal of cleaner production, 2024-04, Vol.447, p.141534, Article 141534

2024

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An electron backscattered diffraction study of twin structure in hsianghualite

Science China. Earth sciences, 2012, Vol.55 (1), p.53-57

2012

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Alternative splicing, RNA-seq and drug discovery

Misuse of RPKM or TPM normalization when comparing across samples and sequencing protocols

Applications of machine learning in drug discovery and development

Assessment of the impact of using a reference transcriptome in mapping short RNA-Seq reads

Shock-deformed zircon from the Chicxulub impact crater and implications for cratering process

Comparison of RNA-Seq and microarray in transcriptome profiling of activated T cells

Single-cell analyses of Crohn's disease tissues reveal intestinal intraepithelial T cells heterogeneity and altered subset distributions

Evaluation of two main RNA-seq approaches for gene quantification in clinical RNA sequencing: polyA+ selection versus rRNA depletion

Evaluation and comparison of computational tools for RNA-seq isoform quantification

Crystallographic orientation relationships between quartz and feldspar in myrmekite; a case study in monzodiorite from Meichuan Pluton, China

Subsets of ILC3-ILC1-like cells generate a diversity spectrum of innate lymphoid cells in human mucosal tissues

RORγt and RORα signature genes in human Th17 cells

Nanoscale constraints on the nucleation and evolution of granular zircon from reidite in impactites at the Chicxulub impact structure

Standard machine learning approaches outperform deep representation learning on phenotype prediction from transcriptomics data

Union Exon Based Approach for RNA-Seq Gene Quantification: To Be or Not to Be?

Comparison of stranded and non-stranded RNA-seq transcriptome profiling and investigation of gene overlap

Hematite Exsolutions in Corundum from Cenozoic Basalts in Changle, Shandong Province, China: Crystallographic Orientation Relationships and Interface Characters

A comprehensive evaluation of ensembl, RefSeq, and UCSC annotations in the context of RNA-seq read mapping and gene quantification

A protein kinase C α and β inhibitor blunts hyperphagia to halt renal function decline and reduces adiposity in a rat model of obesity-driven type 2 diabetes

Crystallographic evidence for simultaneous growth in graphic granite

Publisher Correction: Subsets of ILC3−ILC1-like cells generate a diversity spectrum of innate lymphoid cells in human mucosal tissues

High resolution molecular and histological analysis of renal disease progression in ZSF1 fa/faCP rats, a model of type 2 diabetic nephropathy

canvasDesigner: a versatile interactive high-resolution scientific multi-panel visualization toolkit

The study on the shortcut approach for cooperative disposal of arsenic-rich copper dust and waste acid to prepare high-purity copper

An electron backscattered diffraction study of twin structure in hsianghualite

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