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dbSUPER: a database of super-enhancers in mouse and human genome

Nucleic acids research, 2016-01, Vol.44 (D1), p.D164

2016

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DEsingle for detecting three types of differential expression in single-cell RNA-seq data

Bioinformatics, 2018-09, Vol.34 (18), p.3223-3224

2018

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DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

Bioinformatics, 2010-01, Vol.26 (1), p.136-138

2010

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stPlus: a reference-based method for the accurate enhancement of spatial transcriptomics

Bioinformatics, 2021-07, Vol.37 (Supplement_1), p.i299-i307

2021

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Computational prediction of associations between long non-coding RNAs and proteins

BMC genomics, 2013-09, Vol.14 (1), p.651-651, Article 651

2013

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Integrating gene expression and protein-protein interaction network to prioritize cancer-associated genes

BMC bioinformatics, 2012-07, Vol.13 (1), p.182-182, Article 182

2012

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Precise temporal regulation of alternative splicing during neural development

Nature communications, 2018-06, Vol.9 (1), p.2189-17, Article 2189

2018

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Estimating the total genome length of a metagenomic sample using k-mers

BMC genomics, 2019-04, Vol.20 (Suppl 2), p.183-183, Article 183

2019

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Making genome browsers portable and personal

Genome Biology, 2018-07, Vol.19 (1), p.93-93, Article 93

2018

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Super-enhancers are transcriptionally more active and cell type-specific than stretch enhancers

Epigenetics, 2018-09, Vol.13 (9), p.910-922

2018

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SCeQTL: an R package for identifying eQTL from single-cell parallel sequencing data

BMC bioinformatics, 2020-05, Vol.21 (1), p.184-184, Article 184

2020

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DualGCN: a dual graph convolutional network model to predict cancer drug response

BMC bioinformatics, 2022-04, Vol.23 (Suppl 4), p.129-13, Article 129

2022

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Using DenseFly algorithm for cell searching on massive scRNA-seq datasets

BMC genomics, 2020-12, Vol.21 (Suppl 5), p.222-222, Article 222

2020

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The identification of switch-like alternative splicing exons among multiple samples with RNA-Seq data

PloS one, 2017-05, Vol.12 (5), p.e0178320-e0178320

2017

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Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine

BMC bioinformatics, 2005-12, Vol.6 (1), p.310-310, Article 310

2005

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Using non-uniform read distribution models to improve isoform expression inference in RNA-Seq

Bioinformatics (Oxford, England), 2011-02, Vol.27 (4), p.502-508

2011

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Tongue coating microbiome as a potential biomarker for gastritis including precancerous cascade

Protein & cell, 2019-07, Vol.10 (7), p.496-509

2019

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Epigenetic Switch Driven by DNA Inversions Dictates Phase Variation in Streptococcus pneumoniae

PLoS pathogens, 2016-07, Vol.12 (7), p.e1005762-e1005762

2016

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Identification of important long non-coding RNAs and highly recurrent aberrant alternative splicing events in hepatocellular carcinoma through integrative analysis of multiple RNA-Seq datasets

Molecular genetics and genomics : MGG, 2016-06, Vol.291 (3), p.1035-1051

2016

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The Influence of the Global Gene Expression Shift on Downstream Analyses

PloS one, 2016-04, Vol.11 (4), p.e0153903-e0153903

2016

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Characterization of kinase gene expression and splicing profile in prostate cancer with RNA-Seq data

BMC genomics, 2018-08, Vol.19 (Suppl 6), p.564-564, Article 564

2018

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Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians

Nature genetics, 2011-06, Vol.43 (6), p.531-538

2011

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ulfasQTL: an ultra-fast method of composite splicing QTL analysis

BMC genomics, 2017-01, Vol.18 (Suppl 1), p.963-963, Article 963

2017

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Integrating next-generation sequencing and traditional tongue diagnosis to determine tongue coating microbiome

Scientific reports, 2012-12, Vol.2 (1), p.936-936, Article 936

2012

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Cellular features of localized microenvironments in human meniscal degeneration: a single-cell transcriptomic study

eLife, 2022-12, Vol.11

2022

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dbSUPER: a database of super-enhancers in mouse and human genome

DEsingle for detecting three types of differential expression in single-cell RNA-seq data

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

stPlus: a reference-based method for the accurate enhancement of spatial transcriptomics

Computational prediction of associations between long non-coding RNAs and proteins

Integrating gene expression and protein-protein interaction network to prioritize cancer-associated genes

Precise temporal regulation of alternative splicing during neural development

Estimating the total genome length of a metagenomic sample using k-mers

Making genome browsers portable and personal

Super-enhancers are transcriptionally more active and cell type-specific than stretch enhancers

SCeQTL: an R package for identifying eQTL from single-cell parallel sequencing data

DualGCN: a dual graph convolutional network model to predict cancer drug response

Using DenseFly algorithm for cell searching on massive scRNA-seq datasets

The identification of switch-like alternative splicing exons among multiple samples with RNA-Seq data

Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine

Using non-uniform read distribution models to improve isoform expression inference in RNA-Seq

Tongue coating microbiome as a potential biomarker for gastritis including precancerous cascade

Epigenetic Switch Driven by DNA Inversions Dictates Phase Variation in Streptococcus pneumoniae

Identification of important long non-coding RNAs and highly recurrent aberrant alternative splicing events in hepatocellular carcinoma through integrative analysis of multiple RNA-Seq datasets

The Influence of the Global Gene Expression Shift on Downstream Analyses

Characterization of kinase gene expression and splicing profile in prostate cancer with RNA-Seq data

Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians

ulfasQTL: an ultra-fast method of composite splicing QTL analysis

Integrating next-generation sequencing and traditional tongue diagnosis to determine tongue coating microbiome

Cellular features of localized microenvironments in human meniscal degeneration: a single-cell transcriptomic study

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