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Systematic Discovery of Xist RNA Binding Proteins

Cell, 2015-04, Vol.161 (2), p.404-416

2015

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Structure-based prediction of protein-protein interactions on a genome-wide scale

Nature (London), 2012-10, Vol.490 (7421), p.556-560

2012

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U1 snRNP regulates chromatin retention of noncoding RNAs

Nature (London), 2020-04, Vol.580 (7801), p.147-150

2020

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PARIS: Psoralen Analysis of RNA Interactions and Structures with High Throughput and Resolution

Methods in molecular biology (Clifton, N.J.), 2018, Vol.1649, p.59

2018

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RNA structure probing uncovers RNA structure-dependent biological functions

Nature chemical biology, 2021-07, Vol.17 (7), p.755

2021

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Predicting dynamic cellular protein-RNA interactions by deep learning using in vivo RNA structures

Cell research, 2021-05, Vol.31 (5), p.495-516

2021

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Rapid evolutionary turnover underlies conserved lncRNA-genome interactions

Genes & development, 2016-01, Vol.30 (2), p.191-207

2016

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Targeting RNA structures in diseases with small molecules

Essays in biochemistry, 2020-12, Vol.64 (6), p.955-966

2020

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RNA structure probing reveals the structural basis of Dicer binding and cleavage

Nature communications, 2021-06, Vol.12 (1), p.3397-12, Article 3397

2021

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Revealing lncRNA Structures and Interactions by Sequencing-Based Approaches

Trends in biochemical sciences (Amsterdam. Regular ed.), 2019-01, Vol.44 (1), p.33-52

2019

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RNA structure maps across mammalian cellular compartments

Nature structural & molecular biology, 2019-04, Vol.26 (4), p.322

2019

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Comparison of viral RNA-host protein interactomes across pathogenic RNA viruses informs rapid antiviral drug discovery for SARS-CoV-2

Cell research, 2022-01, Vol.32 (1), p.9-23

2022

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PrismNet: predicting protein-RNA interaction using in vivo RNA structural information

Nucleic acids research, 2023-07, Vol.51 (W1), p.W468

2023

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Identification of mecciRNAs and their roles in the mitochondrial entry of proteins

Science China. Life sciences, 2020-10, Vol.63 (10), p.1429-1449

2020

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Recruitment of TRIM33 to cell‐context specific PML nuclear bodies regulates nodal signaling in mESCs

The EMBO journal, 2023-02, Vol.42 (3), p.e112058-n/a

2023

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RNA Duplex Map in Living Cells Reveals Higher-Order Transcriptome Structure

Cell, 2016-05, Vol.165 (5), p.1267-1279

2016

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A tRNA-Derived Small RNA Regulates Ribosomal Protein S28 Protein Levels after Translation Initiation in Humans and Mice

Cell reports (Cambridge), 2019-12, Vol.29 (12), p.3816-3824.e4

2019

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Critical roles of long noncoding RNAs in Drosophila spermatogenesis

Genome research, 2016-09, Vol.26 (9), p.1233

2016

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Transcriptome-wide interrogation of RNA secondary structure in living cells with icSHAPE

Nature protocols, 2016-02, Vol.11 (2), p.273-290

2016

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Keth-seq for transcriptome-wide RNA structure mapping

Nature chemical biology, 2020-05, Vol.16 (5), p.489

2020

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SCALE method for single-cell ATAC-seq analysis via latent feature extraction

Nature communications, 2019-10, Vol.10 (1), p.4576-10, Article 4576

2019

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In vivo structural characterization of the SARS-CoV-2 RNA genome identifies host proteins vulnerable to repurposed drugs

Cell, 2021-04, Vol.184 (7), p.1865-1883.e20

2021

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The chromatin-remodeling enzyme Smarca5 regulates erythrocyte aggregation via Keap1-Nrf2 signaling

eLife, 2021-10, Vol.10

2021

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A novel cell culture system modeling the SARS-CoV-2 life cycle

PLoS pathogens, 2021-03, Vol.17 (3), p.e1009439

2021

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RASP: an atlas of transcriptome-wide RNA secondary structure probing data

Nucleic acids research, 2021-01, Vol.49 (D1), p.D183

2021

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Systematic Discovery of Xist RNA Binding Proteins

Structure-based prediction of protein-protein interactions on a genome-wide scale

U1 snRNP regulates chromatin retention of noncoding RNAs

PARIS: Psoralen Analysis of RNA Interactions and Structures with High Throughput and Resolution

RNA structure probing uncovers RNA structure-dependent biological functions

Predicting dynamic cellular protein-RNA interactions by deep learning using in vivo RNA structures

Rapid evolutionary turnover underlies conserved lncRNA-genome interactions

Targeting RNA structures in diseases with small molecules

RNA structure probing reveals the structural basis of Dicer binding and cleavage

Revealing lncRNA Structures and Interactions by Sequencing-Based Approaches

RNA structure maps across mammalian cellular compartments

Comparison of viral RNA-host protein interactomes across pathogenic RNA viruses informs rapid antiviral drug discovery for SARS-CoV-2

PrismNet: predicting protein-RNA interaction using in vivo RNA structural information

Identification of mecciRNAs and their roles in the mitochondrial entry of proteins

Recruitment of TRIM33 to cell‐context specific PML nuclear bodies regulates nodal signaling in mESCs

RNA Duplex Map in Living Cells Reveals Higher-Order Transcriptome Structure

A tRNA-Derived Small RNA Regulates Ribosomal Protein S28 Protein Levels after Translation Initiation in Humans and Mice

Critical roles of long noncoding RNAs in Drosophila spermatogenesis

Transcriptome-wide interrogation of RNA secondary structure in living cells with icSHAPE

Keth-seq for transcriptome-wide RNA structure mapping

SCALE method for single-cell ATAC-seq analysis via latent feature extraction

In vivo structural characterization of the SARS-CoV-2 RNA genome identifies host proteins vulnerable to repurposed drugs

The chromatin-remodeling enzyme Smarca5 regulates erythrocyte aggregation via Keap1-Nrf2 signaling

A novel cell culture system modeling the SARS-CoV-2 life cycle

RASP: an atlas of transcriptome-wide RNA secondary structure probing data

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