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HybPiper: Extracting Coding Sequence and Introns for Phylogenetics from High-Throughput Sequencing Reads Using Target Enrichment

Applications in plant sciences, 2016-07, Vol.4 (7), p.n/a

2016

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Amis Pacilo and Yami Cipoho are not the same as the Pacific breadfruit starch crop—Target enrichment phylogenomics of a long-misidentified Artocarpus species sheds light on the northward Austronesian migration from the Philippines to Taiwan

PloS one, 2022-09, Vol.17 (9), p.e0272680-e0272680

2022

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Echoes of ancient introgression punctuate stable genomic lineages in the evolution of figs

Proceedings of the National Academy of Sciences - PNAS, 2023-07, Vol.120 (28), p.e2222035120-e2222035120

2023

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Artocarpus buyangensis (Moraceae), a New Species from Papua New Guinea

Systematic botany, 2022-06, Vol.47 (2), p.452-456

2022

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Allele phasing has minimal impact on phylogenetic reconstruction from targeted nuclear gene sequences in a case study of Artocarpus

American journal of botany, 2018-03, Vol.105 (3), p.404-416

2018

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Out of Borneo: biogeography, phylogeny and divergence date estimates of Artocarpus (Moraceae)

Annals of botany, 2017-03, Vol.119 (4), p.611-627

2017

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Paralogs and Off-Target Sequences Improve Phylogenetic Resolution in a Densely Sampled Study of the Breadfruit Genus ( Artocarpus , Moraceae)

Systematic biology, 2020-09, Vol.70 (3), p.558-575

2020

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Engagement with indigenous people preserves local knowledge and biodiversity alike

Current biology, 2022-06, Vol.32 (11), p.R511-R512

2022

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Linking breadfruit cultivar names across the globe connects histories after 230 years of separation

Current biology, 2023-01, Vol.33 (2), p.287-297.e3

2023

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Artocarpus bergii (Moraceae), a New Species in the Breadfruit Clade from the Moluccas

Systematic botany, 2021-03, Vol.46 (1), p.91-95

2021

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Genetic diversity and structure of the critically endangered Artocarpus annulatus, a crop wild relative of jackfruit ( A. heterophyllus )

PeerJ (San Francisco, CA), 2020-09, Vol.8, p.e9897-e9897, Article e9897

2020

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Phylogeny and biogeography of Maclura (Moraceae) and the origin of an anachronistic fruit

Molecular phylogenetics and evolution, 2017-12, Vol.117, p.49-59

2017

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(2788) Proposal to reject the name Radermachia rotunda (Artocarpus rotundus) (Moraceae)

Taxon, 2020-12, Vol.69 (6), p.1372-1373

2020

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Delimitation of the new tribe Parartocarpeae (Moraceae) is supported by a 333-gene phylogeny and resolves tribal level Moraceae taxonomy

Phytotaxa, 2019-01, Vol.388 (4), p.253

2019

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Draft Genomes of Two Artocarpus Plants, Jackfruit (A. heterophyllus) and Breadfruit (A. altilis)

Genes, 2019-12, Vol.11 (1), p.27

2019

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Genetic Diversity of Bangladeshi Jackfruit (Artocarpus heterophyllus) over Time and Across Seedling Sources

Economic botany, 2019-06, Vol.73 (2), p.233-248

2019

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A transcriptome screen for positive selection in domesticated breadfruit and its wild relatives (Artocarpus spp.)

American journal of botany, 2018-05, Vol.105 (5), p.915-926

2018

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A Flower in Fruit’s Clothing: Pollination of Jackfruit ( Artocarpus heterophyllus , Moraceae) by a New Species of Gall Midge, Clinodiplosis ultracrepidata sp. nov. (Diptera: Cecidomyiidae)

International journal of plant sciences, 2018-06, Vol.179 (5), p.350-367

2018

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(2757) Proposal to reject the name Antiarideae (Moraceae)

Taxon, 2020-08, Vol.69 (4), p.827-828

2020

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Complex origins of breadfruit (Artocarpus altilis, Moraceae): implications for human migrations in Oceania

American journal of botany, 2004-05, Vol.91 (5), p.760-766

2004

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Low-Coverage, Whole-Genome Sequencing of Artocarpus camansi (Moraceae) for Phylogenetic Marker Development and Gene Discovery

Applications in plant sciences, 2016-07, Vol.4 (7), p.n/a

2016

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Phylogeny and Recircumscription of Artocarpeae (Moraceae) with a Focus on Artocarpus

Systematic botany, 2010-10, Vol.35 (4), p.766-782

2010

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Repeated parallel losses of inflexed stamens in Moraceae: Phylogenomics and generic revision of the tribe Moreae and the reinstatement of the tribe Olmedieae (Moraceae)

Taxon, 2021-10, Vol.70 (5), p.946-988

2021

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Origin and diversity of an underutilized fruit tree crop, cempedak (Artocarpus integer, Moraceae)

American journal of botany, 2018-05, Vol.105 (5), p.898-914

2018

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Phylogenomics of Brosimum (Moraceae) and allied genera, including a revised subgeneric system

Taxon, 2021-08, Vol.70 (4), p.778-792

2021

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HybPiper: Extracting Coding Sequence and Introns for Phylogenetics from High-Throughput Sequencing Reads Using Target Enrichment

Amis Pacilo and Yami Cipoho are not the same as the Pacific breadfruit starch crop—Target enrichment phylogenomics of a long-misidentified Artocarpus species sheds light on the northward Austronesian migration from the Philippines to Taiwan

Echoes of ancient introgression punctuate stable genomic lineages in the evolution of figs

Artocarpus buyangensis (Moraceae), a New Species from Papua New Guinea

Allele phasing has minimal impact on phylogenetic reconstruction from targeted nuclear gene sequences in a case study of Artocarpus

Out of Borneo: biogeography, phylogeny and divergence date estimates of Artocarpus (Moraceae)

Paralogs and Off-Target Sequences Improve Phylogenetic Resolution in a Densely Sampled Study of the Breadfruit Genus ( Artocarpus , Moraceae)

Engagement with indigenous people preserves local knowledge and biodiversity alike

Linking breadfruit cultivar names across the globe connects histories after 230 years of separation

Artocarpus bergii (Moraceae), a New Species in the Breadfruit Clade from the Moluccas

Genetic diversity and structure of the critically endangered Artocarpus annulatus, a crop wild relative of jackfruit ( A. heterophyllus )

Phylogeny and biogeography of Maclura (Moraceae) and the origin of an anachronistic fruit

(2788) Proposal to reject the name Radermachia rotunda (Artocarpus rotundus) (Moraceae)

Delimitation of the new tribe Parartocarpeae (Moraceae) is supported by a 333-gene phylogeny and resolves tribal level Moraceae taxonomy

Draft Genomes of Two Artocarpus Plants, Jackfruit (A. heterophyllus) and Breadfruit (A. altilis)

Genetic Diversity of Bangladeshi Jackfruit (Artocarpus heterophyllus) over Time and Across Seedling Sources

A transcriptome screen for positive selection in domesticated breadfruit and its wild relatives (Artocarpus spp.)

A Flower in Fruit’s Clothing: Pollination of Jackfruit ( Artocarpus heterophyllus , Moraceae) by a New Species of Gall Midge, Clinodiplosis ultracrepidata sp. nov. (Diptera: Cecidomyiidae)

(2757) Proposal to reject the name Antiarideae (Moraceae)

Complex origins of breadfruit (Artocarpus altilis, Moraceae): implications for human migrations in Oceania

Low-Coverage, Whole-Genome Sequencing of Artocarpus camansi (Moraceae) for Phylogenetic Marker Development and Gene Discovery

Phylogeny and Recircumscription of Artocarpeae (Moraceae) with a Focus on Artocarpus

Repeated parallel losses of inflexed stamens in Moraceae: Phylogenomics and generic revision of the tribe Moreae and the reinstatement of the tribe Olmedieae (Moraceae)

Origin and diversity of an underutilized fruit tree crop, cempedak (Artocarpus integer, Moraceae)

Phylogenomics of Brosimum (Moraceae) and allied genera, including a revised subgeneric system

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