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Gene expression correlations in human cancer cell lines define molecular interaction networks for epithelial phenotype

PloS one, 2014-06, Vol.9 (6), p.e99269

2014

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High-Throughput GoMiner, an 'industrial-strength' integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of Common Variable Immune Deficiency (CVID)

BMC bioinformatics, 2005-07, Vol.6 (1), p.168-168, Article 168

2005

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VennMaster: area-proportional Euler diagrams for functional GO analysis of microarrays

BMC bioinformatics, 2008-01, Vol.9 (1), p.67-67, Article 67

2008

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Transcription Poisoning by Topoisomerase I Is Controlled by Gene Length, Splice Sites, and miR-142-3p

Cancer research (Chicago, Ill.), 2013-08, Vol.73 (15), p.4830-4839

2013

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Gene expression profiles of the NCI-60 human tumor cell lines define molecular interaction networks governing cell migration processes

PloS one, 2012-05, Vol.7 (5), p.e35716-e35716

2012

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Concordance of gene expression and functional correlation patterns across the NCI-60 cell lines and the Cancer Genome Atlas glioblastoma samples

PloS one, 2012-07, Vol.7 (7), p.e40062-e40062

2012

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Nova regulates brain-specific splicing to shape the synapse

Nature genetics, 2005-08, Vol.37 (8), p.844-852

2005

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A Bioinformatics-Based Alternative mRNA Splicing Code that May Explain Some Disease Mutations Is Conserved in Animals

Frontiers in genetics, 2017-04, Vol.8, p.38

2017

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Genome-wide Analysis of Novel Splice Variants Induced by Topoisomerase I Poisoning Shows Preferential Occurrence in Genes Encoding Splicing Factors

Cancer research (Chicago, Ill.), 2010-10, Vol.70 (20), p.8055-8065

2010

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GoMiner: a resource for biological interpretation of genomic and proteomic data

Genome biology, 2003-01, Vol.4 (4), p.R28-R28, Article R28

2003

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Functional categories associated with clusters of genes that are co-expressed across the NCI-60 cancer cell lines

PloS one, 2012-01, Vol.7 (1), p.e30317-e30317

2012

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SpliceCenter: a suite of web-based bioinformatic applications for evaluating the impact of alternative splicing on RT-PCR, RNAi, microarray, and peptide-based studies

BMC bioinformatics, 2008-07, Vol.9 (1), p.313-313, Article 313

2008

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Mistaken identifiers: gene name errors can be introduced inadvertently when using Excel in bioinformatics

BMC bioinformatics, 2004-06, Vol.5 (1), p.80-80, Article 80

2004

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RedundancyMiner: De-replication of redundant GO categories in microarray and proteomics analysis

BMC bioinformatics, 2011-02, Vol.12 (1), p.52-52, Article 52

2011

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The p53 tumor suppressor network is a key responder to microenvironmental components of chronic inflammatory stress

Cancer research (Chicago, Ill.), 2005-11, Vol.65 (22), p.10255-10264

2005

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AffyProbeMiner: a web resource for computing or retrieving accurately redefined Affymetrix probe sets

Bioinformatics, 2007-09, Vol.23 (18), p.2385-2390

2007

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Analysis of ATP-Binding Cassette Transporter Expression in Drug-Selected Cell Lines by a Microarray Dedicated to Multidrug Resistance

Molecular pharmacology, 2004-12, Vol.66 (6), p.1397-1405

2004

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SpliceMiner: a high-throughput database implementation of the NCBI Evidence Viewer for microarray splice variant analysis

BMC bioinformatics, 2007-03, Vol.8 (1), p.75-75, Article 75

2007

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Sequencing and analysis of 10,967 full-length cDNA clones from Xenopus laevis and Xenopus tropicalis reveals post-tetraploidization transcriptome remodeling

Genome Research, 2006-06, Vol.16 (6), p.796-803

2006

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Ontogenomic study of the relationship between number of gene splice variants and GO categorization

Bioinformatics, 2010-08, Vol.26 (16), p.1945-1949

2010

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The EDGE hypothesis: Epigenetically directed genetic errors in repeat-containing proteins (RCPs) involved in evolution, neuroendocrine signaling, and cancer

Frontiers in neuroendocrinology, 2008-06, Vol.29 (3), p.428-444

2008

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Nonlinear gene cluster analysis with labeling for microarray gene expression data in organ development

BMC proceedings, 2011-05, Vol.5 Suppl 2 (S2), p.S3-S3, Article S3

2011

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Shannon information theoretic computation of synonymous codon usage biases in coding regions of human and mouse genomes

Genome research, 2002-06, Vol.12 (6), p.944-955

Zeeberg, Barry

2002

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MatchMiner: a tool for batch navigation among gene and gene product identifiers

Genome biology, 2003-01, Vol.4 (4), p.R27-R27, Article R27

2003

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Generation and Initial Analysis of More Than 15,000 Full-Length Human and Mouse cDNA Sequences

Proceedings of the National Academy of Sciences - PNAS, 2002-12, Vol.99 (26), p.16899-16903

2002

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Gene expression correlations in human cancer cell lines define molecular interaction networks for epithelial phenotype

High-Throughput GoMiner, an 'industrial-strength' integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of Common Variable Immune Deficiency (CVID)

VennMaster: area-proportional Euler diagrams for functional GO analysis of microarrays

Transcription Poisoning by Topoisomerase I Is Controlled by Gene Length, Splice Sites, and miR-142-3p

Gene expression profiles of the NCI-60 human tumor cell lines define molecular interaction networks governing cell migration processes

Concordance of gene expression and functional correlation patterns across the NCI-60 cell lines and the Cancer Genome Atlas glioblastoma samples

Nova regulates brain-specific splicing to shape the synapse

A Bioinformatics-Based Alternative mRNA Splicing Code that May Explain Some Disease Mutations Is Conserved in Animals

Genome-wide Analysis of Novel Splice Variants Induced by Topoisomerase I Poisoning Shows Preferential Occurrence in Genes Encoding Splicing Factors

GoMiner: a resource for biological interpretation of genomic and proteomic data

Functional categories associated with clusters of genes that are co-expressed across the NCI-60 cancer cell lines

SpliceCenter: a suite of web-based bioinformatic applications for evaluating the impact of alternative splicing on RT-PCR, RNAi, microarray, and peptide-based studies

Mistaken identifiers: gene name errors can be introduced inadvertently when using Excel in bioinformatics

RedundancyMiner: De-replication of redundant GO categories in microarray and proteomics analysis

The p53 tumor suppressor network is a key responder to microenvironmental components of chronic inflammatory stress

AffyProbeMiner: a web resource for computing or retrieving accurately redefined Affymetrix probe sets

Analysis of ATP-Binding Cassette Transporter Expression in Drug-Selected Cell Lines by a Microarray Dedicated to Multidrug Resistance

SpliceMiner: a high-throughput database implementation of the NCBI Evidence Viewer for microarray splice variant analysis

Sequencing and analysis of 10,967 full-length cDNA clones from Xenopus laevis and Xenopus tropicalis reveals post-tetraploidization transcriptome remodeling

Ontogenomic study of the relationship between number of gene splice variants and GO categorization

The EDGE hypothesis: Epigenetically directed genetic errors in repeat-containing proteins (RCPs) involved in evolution, neuroendocrine signaling, and cancer

Nonlinear gene cluster analysis with labeling for microarray gene expression data in organ development

Shannon information theoretic computation of synonymous codon usage biases in coding regions of human and mouse genomes

MatchMiner: a tool for batch navigation among gene and gene product identifiers

Generation and Initial Analysis of More Than 15,000 Full-Length Human and Mouse cDNA Sequences

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