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Identification of cell types from single-cell transcriptomes using a novel clustering method

Bioinformatics (Oxford, England), 2015-06, Vol.31 (12), p.1974-1980

2015

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A map of cis-regulatory modules and constituent transcription factor binding sites in 80% of the mouse genome

BMC genomics, 2022-10, Vol.23 (1), p.714-714, Article 714

2022

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Deciphering epigenomic code for cell differentiation using deep learning

BMC genomics, 2019-09, Vol.20 (1), p.709-709, Article 709

2019

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Accurate prediction of functional states of cis-regulatory modules reveals common epigenetic rules in humans and mice

BMC biology, 2022-10, Vol.20 (1), p.1-221, Article 221

2022

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KSP: an integrated method for predicting catalyzing kinases of phosphorylation sites in proteins

BMC genomics, 2020-08, Vol.21 (1), p.537-537, Article 537

2020

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Transcriptomic changes in single yeast cells under various stress conditions

BMC genomics, 2023-02, Vol.24 (1), p.88-19, Article 88

2023

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Transcriptomic analysis of the spatiotemporal axis of oogenesis and fertilization in C. elegans

Frontiers in cell and developmental biology, 2024-08, Vol.12, p.1436975

2024

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Validated Negative Regions (VNRs) in the VISTA Database might be Truncated Forms of Bona Fide Enhancers

Genetics & genomics next, 2024-06, Vol.5 (2), p.2300209-n/a

2024

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MaxMIF: A New Method for Identifying Cancer Driver Genes through Effective Data Integration

Advanced science, 2018-09, Vol.5 (9), p.1800640-n/a

2018

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Dynamic changes in fecal bacterial microbiota of dairy cattle across the production line

BMC microbiology, 2022-05, Vol.22 (1), p.132-132, Article 132

2022

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Directional RNA-seq reveals highly complex condition-dependent transcriptomes in E. coli K12 through accurate full-length transcripts assembling

BMC genomics, 2013-07, Vol.14 (1), p.520-520, Article 520

2013

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Operon prediction using both genome-specific and general genomic information

Nucleic acids research, 2007-01, Vol.35 (1), p.288-298

2007

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Computational analysis of LexA regulons in Cyanobacteria

BMC genomics, 2010-09, Vol.11 (1), p.527-527, Article 527

2010

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Annotations of four high-quality indigenous chicken genomes identify more than one thousand missing genes in subtelomeric regions and micro-chromosomes with high G/C contents

BMC genomics, 2024-05, Vol.25 (1), p.430-430, Article 430

2024

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Artificial selection footprints in indigenous and commercial chicken genomes

BMC genomics, 2024-04, Vol.25 (1), p.428-428, Article 428

2024

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Integrative analysis of transcriptomics and metabolomics to reveal the melanogenesis pathway of muscle and related meat characters in Wuliangshan black-boned chickens

BMC genomics, 2022-03, Vol.23 (1), p.173-173, Article 173

2022

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Selection for growth rate and body size have altered the expression profiles of somatotropic axis genes in chickens

PloS one, 2018-04, Vol.13 (4), p.e0195378-e0195378

2018

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Benchmarking Bacterial Promoter Prediction Tools: Potentialities and Limitations

mSystems, 2020-08, Vol.5 (4)

2020

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Computational prediction of Pho regulons in cyanobacteria

BMC genomics, 2007-06, Vol.8 (1), p.156-156, Article 156

2007

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High-quality genome assembly of a C. crossoptilon and related functional and genetics data resources

Scientific data, 2024-02, Vol.11 (1), p.247-247, Article 247

2024

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A novel alignment-free method for comparing transcription factor binding site motifs

PloS one, 2010-01, Vol.5 (1), p.e8797-e8797

2010

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Computational prediction of cAMP receptor protein (CRP) binding sites in cyanobacterial genomes

BMC genomics, 2009-01, Vol.10 (1), p.23-23

2009

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De novo prediction of cis-regulatory elements and modules through integrative analysis of a large number of ChIP datasets

BMC genomics, 2014-12, Vol.15 (1), p.1047-1047, Article 1047

2014

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Profiles of expression pattern and tissue distribution of host defense peptides genes in different chicken (Gallus gallus) breeds related to body weight

PloS one, 2020-12, Vol.15 (12), p.e0238675

2020

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High quality assemblies of four indigenous chicken genomes and related functional data resources

Scientific data, 2024-03, Vol.11 (1), p.300-300, Article 300

2024

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Identification of cell types from single-cell transcriptomes using a novel clustering method

A map of cis-regulatory modules and constituent transcription factor binding sites in 80% of the mouse genome

Deciphering epigenomic code for cell differentiation using deep learning

Accurate prediction of functional states of cis-regulatory modules reveals common epigenetic rules in humans and mice

KSP: an integrated method for predicting catalyzing kinases of phosphorylation sites in proteins

Transcriptomic changes in single yeast cells under various stress conditions

Transcriptomic analysis of the spatiotemporal axis of oogenesis and fertilization in C. elegans

Validated Negative Regions (VNRs) in the VISTA Database might be Truncated Forms of Bona Fide Enhancers

MaxMIF: A New Method for Identifying Cancer Driver Genes through Effective Data Integration

Dynamic changes in fecal bacterial microbiota of dairy cattle across the production line

Directional RNA-seq reveals highly complex condition-dependent transcriptomes in E. coli K12 through accurate full-length transcripts assembling

Operon prediction using both genome-specific and general genomic information

Computational analysis of LexA regulons in Cyanobacteria

Annotations of four high-quality indigenous chicken genomes identify more than one thousand missing genes in subtelomeric regions and micro-chromosomes with high G/C contents

Artificial selection footprints in indigenous and commercial chicken genomes

Integrative analysis of transcriptomics and metabolomics to reveal the melanogenesis pathway of muscle and related meat characters in Wuliangshan black-boned chickens

Selection for growth rate and body size have altered the expression profiles of somatotropic axis genes in chickens

Benchmarking Bacterial Promoter Prediction Tools: Potentialities and Limitations

Computational prediction of Pho regulons in cyanobacteria

High-quality genome assembly of a C. crossoptilon and related functional and genetics data resources

A novel alignment-free method for comparing transcription factor binding site motifs

Computational prediction of cAMP receptor protein (CRP) binding sites in cyanobacterial genomes

De novo prediction of cis-regulatory elements and modules through integrative analysis of a large number of ChIP datasets

Profiles of expression pattern and tissue distribution of host defense peptides genes in different chicken (Gallus gallus) breeds related to body weight

High quality assemblies of four indigenous chicken genomes and related functional data resources

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