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Cross-Linking Mass Spectrometry: An Emerging Technology for Interactomics and Structural Biology

Analytical chemistry (Washington), 2018-01, Vol.90 (1), p.144-165

2018

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Protein interaction landscapes revealed by advanced in vivo cross-linking-mass spectrometry

Proceedings of the National Academy of Sciences - PNAS, 2021-08, Vol.118 (32), p.1

2021

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Cadmium binding by the F-box domain induces p97-mediated SCF complex disassembly to activate stress response programs

Nature communications, 2024-05, Vol.15 (1), p.3894-3894, Article 3894

2024

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Wor1 establishes opaque cell fate through inhibition of the general co-repressor Tup1 in Candida albicans

PLoS genetics, 2018-01, Vol.14 (1), p.e1007176-e1007176

2018

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Pentatricopeptide repeat poly(A) binding protein KPAF4 stabilizes mitochondrial mRNAs in Trypanosoma brucei

Nature communications, 2019-01, Vol.10 (1), p.146-146, Article 146

2019

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Gln40 deamidation blocks structural reconfiguration and activation of SCF ubiquitin ligase complex by Nedd8

Nature communications, 2015-12, Vol.6 (1), p.10053-10053, Article 10053

2015

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Branched ubiquitin chain binding and deubiquitination by UCH37 facilitate proteasome clearance of stress-induced inclusions

eLife, 2021-11, Vol.10

2021

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Proteomic profiling of the monothiol glutaredoxin Grx3 reveals its global role in the regulation of iron dependent processes

PLoS genetics, 2020-06, Vol.16 (6), p.e1008881-e1008881

2020

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Structural Basis for Shelterin Bridge Assembly

Molecular cell, 2017-11, Vol.68 (4), p.698-714.e5

2017

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New advances in cross-linking mass spectrometry toward structural systems biology

Current opinion in chemical biology, 2023-10, Vol.76, p.102357-102357, Article 102357

2023

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Spatial Organization and Molecular Interactions of the Schizosaccharomyces pombe Ccq1–Tpz1–Poz1 Shelterin Complex

Journal of molecular biology, 2017-09, Vol.429 (19), p.2863-2872

2017

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Dissecting Fission Yeast Shelterin Interactions via MICro-MS Links Disruption of Shelterin Bridge to Tumorigenesis

Cell reports (Cambridge), 2015-09, Vol.12 (12), p.2169-2180

2015

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Developing a Targeted Quantitative Strategy for Sulfoxide-Containing MS-Cleavable Cross-Linked Peptides to Probe Conformational Dynamics of Protein Complexes

Analytical chemistry (Washington), 2022-03, Vol.94 (10), p.4390-4398

2022

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Anterograde regulation of mitochondrial genes and FGF21 signaling by hepatic LSD1

JCI insight, 2021-09, Vol.6 (17)

2021

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Developing a Bimolecular Affinity Purification Strategy to Isolate 26S Proteasome Holocomplexes for Complex-Centric Proteomic Analysis

Analytical chemistry (Washington), 2021-10, Vol.93 (39), p.13407-13413

2021

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Two-Dimensional Fractionation Method for Proteome-Wide Cross-Linking Mass Spectrometry Analysis

Analytical chemistry (Washington), 2022-03, Vol.94 (10), p.4236-4242

2022

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DSBSO-Based XL-MS Analysis of Breast Cancer PDX Tissues to Delineate Protein Interaction Network in Clinical Samples

Journal of proteome research, 2024-08, Vol.23 (8), p.3269-3279

2024

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Developing a Multiplexed Quantitative Cross-Linking Mass Spectrometry Platform for Comparative Structural Analysis of Protein Complexes

Analytical chemistry (Washington), 2016-10, Vol.88 (20), p.10301-10308

2016

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Structural dynamics of the human COP9 signalosome revealed by cross-linking mass spectrometry and integrative modeling

Proceedings of the National Academy of Sciences - PNAS, 2020-02, Vol.117 (8), p.4088-4098

2020

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Developing New Isotope-Coded Mass Spectrometry-Cleavable Cross-Linkers for Elucidating Protein Structures

Analytical chemistry (Washington), 2014-02, Vol.86 (4), p.2099-2106

2014

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The Ubiquitin Interacting Motif-Like Domain of Met4 Selectively Binds K48 Polyubiquitin Chains

Molecular & cellular proteomics, 2022-01, Vol.21 (1), p.100175-100175, Article 100175

2022

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A New in Vivo Cross-linking Mass Spectrometry Platform to Define Protein–Protein Interactions in Living Cells

Molecular & cellular proteomics, 2014-12, Vol.13 (12), p.3533-3543

2014

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Exploring an Alternative Cysteine-Reactive Chemistry to Enable Proteome-Wide PPI Analysis by Cross-Linking Mass Spectrometry

Analytical chemistry (Washington), 2023-01, Vol.95 (4), p.2532-2539

2023

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The proteasome-interacting Ecm29 protein disassembles the 26S proteasome in response to oxidative stress

The Journal of biological chemistry, 2017-09, Vol.292 (39), p.16310-16320

2017

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Human red and green cone opsins are O-glycosylated at an N-terminal Ser/Thr–rich domain conserved in vertebrates

The Journal of biological chemistry, 2019-05, Vol.294 (20), p.8123-8133

2019

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Cross-Linking Mass Spectrometry: An Emerging Technology for Interactomics and Structural Biology

Protein interaction landscapes revealed by advanced in vivo cross-linking-mass spectrometry

Cadmium binding by the F-box domain induces p97-mediated SCF complex disassembly to activate stress response programs

Wor1 establishes opaque cell fate through inhibition of the general co-repressor Tup1 in Candida albicans

Pentatricopeptide repeat poly(A) binding protein KPAF4 stabilizes mitochondrial mRNAs in Trypanosoma brucei

Gln40 deamidation blocks structural reconfiguration and activation of SCF ubiquitin ligase complex by Nedd8

Branched ubiquitin chain binding and deubiquitination by UCH37 facilitate proteasome clearance of stress-induced inclusions

Proteomic profiling of the monothiol glutaredoxin Grx3 reveals its global role in the regulation of iron dependent processes

Structural Basis for Shelterin Bridge Assembly

New advances in cross-linking mass spectrometry toward structural systems biology

Spatial Organization and Molecular Interactions of the Schizosaccharomyces pombe Ccq1–Tpz1–Poz1 Shelterin Complex

Dissecting Fission Yeast Shelterin Interactions via MICro-MS Links Disruption of Shelterin Bridge to Tumorigenesis

Developing a Targeted Quantitative Strategy for Sulfoxide-Containing MS-Cleavable Cross-Linked Peptides to Probe Conformational Dynamics of Protein Complexes

Anterograde regulation of mitochondrial genes and FGF21 signaling by hepatic LSD1

Developing a Bimolecular Affinity Purification Strategy to Isolate 26S Proteasome Holocomplexes for Complex-Centric Proteomic Analysis

Two-Dimensional Fractionation Method for Proteome-Wide Cross-Linking Mass Spectrometry Analysis

DSBSO-Based XL-MS Analysis of Breast Cancer PDX Tissues to Delineate Protein Interaction Network in Clinical Samples

Developing a Multiplexed Quantitative Cross-Linking Mass Spectrometry Platform for Comparative Structural Analysis of Protein Complexes

Structural dynamics of the human COP9 signalosome revealed by cross-linking mass spectrometry and integrative modeling

Developing New Isotope-Coded Mass Spectrometry-Cleavable Cross-Linkers for Elucidating Protein Structures

The Ubiquitin Interacting Motif-Like Domain of Met4 Selectively Binds K48 Polyubiquitin Chains

A New in Vivo Cross-linking Mass Spectrometry Platform to Define Protein–Protein Interactions in Living Cells

Exploring an Alternative Cysteine-Reactive Chemistry to Enable Proteome-Wide PPI Analysis by Cross-Linking Mass Spectrometry

The proteasome-interacting Ecm29 protein disassembles the 26S proteasome in response to oxidative stress

Human red and green cone opsins are O-glycosylated at an N-terminal Ser/Thr–rich domain conserved in vertebrates

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