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Functional phenomics: an emerging field integrating high-throughput phenotyping, physiology, and bioinformatics

Journal of experimental botany, 2019-01, Vol.70 (2), p.379-386

York, Larry M

2019

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Targeting Root Ion Uptake Kinetics to Increase Plant Productivity and Nutrient Use Efficiency

Plant physiology (Bethesda), 2020-04, Vol.182 (4), p.1854-1868

2020

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The holistic rhizosphere: integrating zones, processes, and semantics in the soil influenced by roots

Journal of experimental botany, 2016-06, Vol.67 (12), p.3629-3643

2016

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RhizoVision Explorer: open-source software for root image analysis and measurement standardization

AoB plants, 2021-12, Vol.13 (6), p.plab056-plab056

2021

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Integration of root phenes for soil resource acquisition

Frontiers in plant science, 2013, Vol.4, p.355-355

2013

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Can smart nutrient applications optimize the plant's hidden half to improve drought resistance?

Physiologia plantarum, 2021-06, Vol.172 (2), p.1007-1015

2021

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Rice actin binding protein RMD controls crown root angle in response to external phosphate

Nature communications, 2018-06, Vol.9 (1), p.2346-9, Article 2346

2018

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RhizoVision Crown: An Integrated Hardware and Software Platform for Root Crown Phenotyping

Plant phenomics, 2020-01, Vol.2020, p.3074916-3074916

2020

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Application of Synthetic Peptide CEP1 Increases Nutrient Uptake Rates Along Plant Roots

Frontiers in plant science, 2022-01, Vol.12, p.793145

2022

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Maize with fewer nodal roots allocates mass to more lateral and deep roots that improve nitrogen uptake and shoot growth

Journal of experimental botany, 2019-10, Vol.70 (19), p.5299-5309

2019

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Genome-Wide Association Study of Topsoil Root System Architecture in Field-Grown Soybean [ Glycine max (L.) Merr.]

Frontiers in plant science, 2021-02, Vol.11, p.590179-590179

2021

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Objective Phenotyping of Root System Architecture Using Image Augmentation and Machine Learning in Alfalfa (Medicago sativa L.)

Plant phenomics, 2022-01, Vol.2022 (1), p.9879610-9879610

2022

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Intraspecific Variation for Leaf Physiological and Root Morphological Adaptation to Drought Stress in Alfalfa ( Medicago sativa L.)

Frontiers in plant science, 2022-05, Vol.13, p.795011-795011

2022

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Root system architecture in cereals: progress, challenges and perspective

The Plant journal : for cell and molecular biology, 2022-04, Vol.110 (1), p.23-42

2022

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The State of the Art in Root System Architecture Image Analysis Using Artificial Intelligence: A Review

Plant phenomics, 2024-01, Vol.6, p.0178-0178

2024

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Phenotyping Alfalfa ( Medicago sativa L.) Root Structure Architecture via Integrating Confident Machine Learning with ResNet-18

Plant phenomics, 2024, Vol.6, p.0251

2024

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A starting guide to root ecology: strengthening ecological concepts and standardising root classification, sampling, processing and trait measurements

The New phytologist, 2021-11, Vol.232 (3), p.973-1122

2021

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Intensive field phenotyping of maize (Zea mays L.) root crowns identifies phenes and phene integration associated with plant growth and nitrogen acquisition

Journal of experimental botany, 2015-09, Vol.66 (18), p.5493-5505

2015

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An integrated framework of plant form and function: the belowground perspective

The New phytologist, 2021-10, Vol.232 (1), p.42-59

2021

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X‐ray CT reveals 4D root system development and lateral root responses to nitrate in soil

Plant phenome journal, 2022, Vol.5 (1), p.n/a

2022

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The fungal collaboration gradient dominates the root economics space in plants

Science advances, 2020-07, Vol.6 (27)

2020

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Few-Shot Learning Enables Population-Scale Analysis of Leaf Traits in Populus trichocarpa

Plant phenomics, 2023, Vol.5 (-), p.0072

2023

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Whole-plant phenotypic engineering: moving beyond ratios for multi-objective optimization of nutrient use efficiency

Current opinion in biotechnology, 2022-06, Vol.75 (1), p.102682-102682, Article 102682

2022

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Root foraging elicits niche complementarity-dependent yield advantage in the ancient ‘three sisters’ (maize/bean/squash) polyculture

Annals of botany, 2014-12, Vol.114 (8), p.1719-1733

2014

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Phenotyping Crop Root Crowns: General Guidance and Specific Protocols for Maize, Wheat, and Soybean

Methods in molecular biology (Clifton, N.J.), 2018, Vol.1761, p.23

York, Larry M

2018

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Functional phenomics: an emerging field integrating high-throughput phenotyping, physiology, and bioinformatics

Targeting Root Ion Uptake Kinetics to Increase Plant Productivity and Nutrient Use Efficiency

The holistic rhizosphere: integrating zones, processes, and semantics in the soil influenced by roots

RhizoVision Explorer: open-source software for root image analysis and measurement standardization

Integration of root phenes for soil resource acquisition

Can smart nutrient applications optimize the plant's hidden half to improve drought resistance?

Rice actin binding protein RMD controls crown root angle in response to external phosphate

RhizoVision Crown: An Integrated Hardware and Software Platform for Root Crown Phenotyping

Application of Synthetic Peptide CEP1 Increases Nutrient Uptake Rates Along Plant Roots

Maize with fewer nodal roots allocates mass to more lateral and deep roots that improve nitrogen uptake and shoot growth

Genome-Wide Association Study of Topsoil Root System Architecture in Field-Grown Soybean [ Glycine max (L.) Merr.]

Objective Phenotyping of Root System Architecture Using Image Augmentation and Machine Learning in Alfalfa (Medicago sativa L.)

Intraspecific Variation for Leaf Physiological and Root Morphological Adaptation to Drought Stress in Alfalfa ( Medicago sativa L.)

Root system architecture in cereals: progress, challenges and perspective

The State of the Art in Root System Architecture Image Analysis Using Artificial Intelligence: A Review

Phenotyping Alfalfa ( Medicago sativa L.) Root Structure Architecture via Integrating Confident Machine Learning with ResNet-18

A starting guide to root ecology: strengthening ecological concepts and standardising root classification, sampling, processing and trait measurements

Intensive field phenotyping of maize (Zea mays L.) root crowns identifies phenes and phene integration associated with plant growth and nitrogen acquisition

An integrated framework of plant form and function: the belowground perspective

X‐ray CT reveals 4D root system development and lateral root responses to nitrate in soil

The fungal collaboration gradient dominates the root economics space in plants

Few-Shot Learning Enables Population-Scale Analysis of Leaf Traits in Populus trichocarpa

Whole-plant phenotypic engineering: moving beyond ratios for multi-objective optimization of nutrient use efficiency

Root foraging elicits niche complementarity-dependent yield advantage in the ancient ‘three sisters’ (maize/bean/squash) polyculture

Phenotyping Crop Root Crowns: General Guidance and Specific Protocols for Maize, Wheat, and Soybean

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