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Cytosolic proteins can exploit membrane localization to trigger functional assembly

PLoS computational biology, 2018-03, Vol.14 (3), p.e1006031-e1006031

2018

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Theory of bi-molecular association dynamics in 2D for accurate model and experimental parameterization of binding rates

The Journal of chemical physics, 2015-08, Vol.143 (8), p.084117-084117

2015

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Mathematical model of a personalized neoantigen cancer vaccine and the human immune system

PLoS computational biology, 2021-09, Vol.17 (9), p.e1009318

2021

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A Mechanochemical Model of Actin Filaments

Biophysical journal, 2012-08, Vol.103 (4), p.719-727

2012

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SampPick: Selection of a Cohort of Subjects Matching a Population HLA Distribution

Frontiers in immunology, 2019-12, Vol.10, p.2894-2894

2019

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A machine learning approach for identifying variables associated with risk of developing neutralizing antidrug antibodies to factor VIII

Heliyon, 2023-06, Vol.9 (6), p.e16331-e16331, Article e16331

2023

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Benefit-risk assessment of Covid-19 vaccine, MRNA (MRNA-1273) for males age 18–64 years

Vaccine: X, 2023-08, Vol.14, p.100325-100325, Article 100325

2023

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Restricted Mobility of Conserved Residues in Protein-Protein Interfaces in Molecular Simulations

Biophysical journal, 2008-05, Vol.94 (9), p.3475-3485

2008

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NERDSS: A Nonequilibrium Simulator for Multibody Self-Assembly at the Cellular Scale

Biophysical journal, 2020-06, Vol.118 (12), p.3026-3040

2020

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A Systematic Review of the Efforts and Hindrances of Modeling and Simulation of CAR T-cell Therapy

The AAPS journal, 2021-04, Vol.23 (3), p.52, Article 52

2021

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Analysis of tumor-immune functional responses in a mathematical model of neoantigen cancer vaccines

Mathematical biosciences, 2023-02, Vol.356 (C), p.108966, Article 108966

2023

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Benefit-risk assessment of COVID-19 vaccine, mRNA (Comirnaty) for age 16–29 years

Vaccine, 2022-04, Vol.40 (19), p.2781-2789

2022

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Dose optimization of an adjuvanted peptide-based personalized neoantigen melanoma vaccine

PLoS computational biology, 2024-03, Vol.20 (3), p.e1011247-e1011247

2024

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Dosage optimization for reducing tumor burden using a phenotype-structured population model with a drug-resistance continuum

Mathematical medicine and biology, 2024-03, Vol.41 (1), p.35-52

2024

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A Retrospective Review of Center for Biologics Evaluation and Research Advisory Committee Meetings in the Context of the FDA’s Benefit-Risk Framework

The AAPS journal, 2023-02, Vol.25 (1), p.24-24, Article 24

2023

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TCPro: an In Silico Risk Assessment Tool for Biotherapeutic Protein Immunogenicity

The AAPS journal, 2019-08, Vol.21 (5), p.96-96, Article 96

2019

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An implicit lipid model for efficient reaction-diffusion simulations of protein binding to surfaces of arbitrary topology

The Journal of chemical physics, 2019-09, Vol.151 (12), p.124115-124115

2019

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Summary of a Public FDA Workshop: Model Informed Drug Development Approaches for Immunogenicity Assessments

Clinical pharmacology and therapeutics, 2023-02, Vol.113 (2), p.221-225

2023

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Predictive model for Zika virus RNA minipool nucleic acid testing in outbreak scenarios

Transfusion (Philadelphia, Pa.), 2019-07, Vol.59 (7), p.2211-2217

2019

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Collective cancer cell invasion induced by coordinated contractile stresses

Oncotarget, 2015-12, Vol.6 (41), p.43438-43451

2015

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Statistical thermodynamics of residue fluctuations in native proteins

The Journal of chemical physics, 2009-03, Vol.130 (9), p.095103-095103-13

2009

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Mechanical Response and Conformational Amplification in α-Helical Coiled Coils

Biophysical journal, 2010-12, Vol.99 (12), p.3895-3904

2010

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Artificial Intelligence (AI) based approach for identifying biomarkers associated with neutralizing antidrug antibodies to Factor VIII used in Hemophilia A treatment

The Journal of immunology (1950), 2023-05, Vol.210 (1_Supplement), p.250-250.03

2023

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Dose optimization of an adjuvanted peptide-based personalized neoantigen melanoma vaccine

PLoS computational biology, 2024-03, Vol.20 (3)

2024

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Extracting Gene Regulation Information from Microarray Time-Series Data Using Hidden Markov Models

Lecture notes in computer science, 2006, p.144-153

2006

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Cytosolic proteins can exploit membrane localization to trigger functional assembly

Theory of bi-molecular association dynamics in 2D for accurate model and experimental parameterization of binding rates

Mathematical model of a personalized neoantigen cancer vaccine and the human immune system

A Mechanochemical Model of Actin Filaments

SampPick: Selection of a Cohort of Subjects Matching a Population HLA Distribution

A machine learning approach for identifying variables associated with risk of developing neutralizing antidrug antibodies to factor VIII

Benefit-risk assessment of Covid-19 vaccine, MRNA (MRNA-1273) for males age 18–64 years

Restricted Mobility of Conserved Residues in Protein-Protein Interfaces in Molecular Simulations

NERDSS: A Nonequilibrium Simulator for Multibody Self-Assembly at the Cellular Scale

A Systematic Review of the Efforts and Hindrances of Modeling and Simulation of CAR T-cell Therapy

Analysis of tumor-immune functional responses in a mathematical model of neoantigen cancer vaccines

Benefit-risk assessment of COVID-19 vaccine, mRNA (Comirnaty) for age 16–29 years

Dose optimization of an adjuvanted peptide-based personalized neoantigen melanoma vaccine

Dosage optimization for reducing tumor burden using a phenotype-structured population model with a drug-resistance continuum

A Retrospective Review of Center for Biologics Evaluation and Research Advisory Committee Meetings in the Context of the FDA’s Benefit-Risk Framework

TCPro: an In Silico Risk Assessment Tool for Biotherapeutic Protein Immunogenicity

An implicit lipid model for efficient reaction-diffusion simulations of protein binding to surfaces of arbitrary topology

Summary of a Public FDA Workshop: Model Informed Drug Development Approaches for Immunogenicity Assessments

Predictive model for Zika virus RNA minipool nucleic acid testing in outbreak scenarios

Collective cancer cell invasion induced by coordinated contractile stresses

Statistical thermodynamics of residue fluctuations in native proteins

Mechanical Response and Conformational Amplification in α-Helical Coiled Coils

Artificial Intelligence (AI) based approach for identifying biomarkers associated with neutralizing antidrug antibodies to Factor VIII used in Hemophilia A treatment

Dose optimization of an adjuvanted peptide-based personalized neoantigen melanoma vaccine

Extracting Gene Regulation Information from Microarray Time-Series Data Using Hidden Markov Models

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