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Experimental evolution for the recovery of growth loss due to genome reduction

eLife, 2024-05, Vol.13

2024

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Efforts to Minimise the Bacterial Genome as a Free-Living Growing System

Biology (Basel, Switzerland), 2023-08, Vol.12 (9), p.1170

2023

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Mutation accumulation under UV radiation in Escherichia coli

Scientific reports, 2017-11, Vol.7 (1), p.14531-12, Article 14531

2017

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Correlation between the spatial distribution and colony size was common for monogenetic bacteria in laboratory conditions

BMC microbiology, 2021-04, Vol.21 (1), p.114-114, Article 114

2021

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Correlation between genome reduction and bacterial growth

DNA research, 2016-12, Vol.23 (6), p.517-525

2016

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Predicting the decision making chemicals used for bacterial growth

Scientific reports, 2019-05, Vol.9 (1), p.7251-7251, Article 7251

2019

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Experimental Evolution Expands the Breadth of Adaptation to an Environmental Gradient Correlated With Genome Reduction

Frontiers in microbiology, 2022-01, Vol.13, p.826894-826894

2022

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Comparison of sequence reads obtained from three next-generation sequencing platforms

PloS one, 2011-05, Vol.6 (5), p.e19534

2011

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Growth rate-associated transcriptome reorganization in response to genomic, environmental, and evolutionary interruptions

Frontiers in microbiology, 2023-03, Vol.14, p.1145673-1145673

2023

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Precise, High-throughput Analysis of Bacterial Growth

Journal of visualized experiments, 2017-09 (127)

2017

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Coordinated Changes in Mutation and Growth Rates Induced by Genome Reduction

mBio, 2017-07, Vol.8 (4)

2017

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Bimodal protein solubility distribution revealed by an aggregation analysis of the entire ensemble of Escherichia coli proteins

Proceedings of the National Academy of Sciences - PNAS, 2009-03, Vol.106 (11), p.4201-4206

2009

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Employing active learning in the optimization of culture medium for mammalian cells

NPJ systems biology and applications, 2023-05, Vol.9 (1), p.20-20, Article 20

2023

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A decay effect of the growth rate associated with genome reduction in Escherichia coli

BMC microbiology, 2018-09, Vol.18 (1), p.101-101, Article 101

2018

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Gene Expression Order Attributed to Genome Reduction and the Steady Cellular State in Escherichia coli

Frontiers in microbiology, 2018-09, Vol.9, p.2255-2255

2018

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Global coordination of the mutation and growth rates across the genetic and nutritional variety in Escherichia coli

Frontiers in microbiology, 2022-09, Vol.13, p.990969-990969

2022

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Evolutionary Consequence of a Trade-Off between Growth and Maintenance along with Ribosomal Damages

PloS one, 2015-08, Vol.10 (8), p.e0135639-e0135639

2015

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A simple comparison of the extrinsic noise in gene expression between native and foreign regulations in Escherichia coli

Biochemical and biophysical research communications, 2017-05, Vol.486 (3), p.852-857

2017

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Experimental Challenges for Reduced Genomes: The Cell Model Escherichia coli

Microorganisms (Basel), 2019-12, Vol.8 (1), p.3

2019

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Challenges in developing cell culture media using machine learning

Biotechnology advances, 2024-01, Vol.70, p.108293-108293, Article 108293

2024

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Nutrient‐dependent growth defects and mutability of mutators in Escherichia coli

Genes to cells : devoted to molecular & cellular mechanisms, 2015-01, Vol.20 (1), p.68-76

2015

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Bacterial transcriptome reorganization in thermal adaptive evolution

BMC genomics, 2015-10, Vol.16 (1), p.802-802, Article 802

2015

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Primordial mimicry induces morphological change in Escherichia coli

Communications biology, 2022-01, Vol.5 (1), p.24-24, Article 24

2022

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Machine learning-assisted medium optimization revealed the discriminated strategies for improved production of the foreign and native metabolites

Computational and structural biotechnology journal, 2023-01, Vol.21, p.2654-2663

2023

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Cell‐free translation systems for protein engineering

The FEBS journal, 2006-09, Vol.273 (18), p.4133-4140

2006

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Experimental evolution for the recovery of growth loss due to genome reduction

Efforts to Minimise the Bacterial Genome as a Free-Living Growing System

Mutation accumulation under UV radiation in Escherichia coli

Correlation between the spatial distribution and colony size was common for monogenetic bacteria in laboratory conditions

Correlation between genome reduction and bacterial growth

Predicting the decision making chemicals used for bacterial growth

Experimental Evolution Expands the Breadth of Adaptation to an Environmental Gradient Correlated With Genome Reduction

Comparison of sequence reads obtained from three next-generation sequencing platforms

Growth rate-associated transcriptome reorganization in response to genomic, environmental, and evolutionary interruptions

Precise, High-throughput Analysis of Bacterial Growth

Coordinated Changes in Mutation and Growth Rates Induced by Genome Reduction

Bimodal protein solubility distribution revealed by an aggregation analysis of the entire ensemble of Escherichia coli proteins

Employing active learning in the optimization of culture medium for mammalian cells

A decay effect of the growth rate associated with genome reduction in Escherichia coli

Gene Expression Order Attributed to Genome Reduction and the Steady Cellular State in Escherichia coli

Global coordination of the mutation and growth rates across the genetic and nutritional variety in Escherichia coli

Evolutionary Consequence of a Trade-Off between Growth and Maintenance along with Ribosomal Damages

A simple comparison of the extrinsic noise in gene expression between native and foreign regulations in Escherichia coli

Experimental Challenges for Reduced Genomes: The Cell Model Escherichia coli

Challenges in developing cell culture media using machine learning

Nutrient‐dependent growth defects and mutability of mutators in Escherichia coli

Bacterial transcriptome reorganization in thermal adaptive evolution

Primordial mimicry induces morphological change in Escherichia coli

Machine learning-assisted medium optimization revealed the discriminated strategies for improved production of the foreign and native metabolites

Cell‐free translation systems for protein engineering

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