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An individualized stemness‐related signature to predict prognosis and immunotherapy responses for gastric cancer using single‐cell and bulk tissue transcriptomes

Cancer medicine (Malden, MA), 2024-01, Vol.13 (1), p.e6908-n/a

2024

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Robust transcriptional signatures for low-input RNA samples based on relative expression orderings

BMC genomics, 2017-11, Vol.18 (1), p.913-913, Article 913

2017

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Quantitative or qualitative transcriptional diagnostic signatures? A case study for colorectal cancer

BMC genomics, 2018-01, Vol.19 (1), p.99-99, Article 99

2018

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lncRNA pair as candidate diagnostic signature for colorectal cancer based on the within-sample relative expression levels

Frontiers in oncology, 2022-08, Vol.12, p.912882-912882

2022

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Identification of the origin of brain metastases based on the relative methylation orderings of CpG sites

Epigenetics, 2021-08, Vol.16 (8), p.908-916

2021

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A qualitative transcriptional signature for the early diagnosis of colorectal cancer

Cancer science, 2019-10, Vol.110 (10), p.3225-3234

2019

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Identification of Genes Universally Differentially Expressed in Gastric Cancer

BioMed research international, 2021, Vol.2021, p.7326853-9

2021

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Qualitative transcriptional signature for predicting pathological response of colorectal cancer to FOLFOX therapy

Cancer science, 2020-01, Vol.111 (1), p.253-265

2020

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CpG_MPs: identification of CpG methylation patterns of genomic regions from high-throughput bisulfite sequencing data

Nucleic acids research, 2013-01, Vol.41 (1), p.e4

2013

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Identification reproducible microbiota biomarkers for the diagnosis of cirrhosis and hepatocellular carcinoma

AMB Express, 2023-03, Vol.13 (1), p.35-35, Article 35

2023

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Circumvent the uncertainty in the applications of transcriptional signatures to tumor tissues sampled from different tumor sites

Oncotarget, 2017-05, Vol.8 (18), p.30265-30275

2017

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Hierarchical identification of a transcriptional panel for the histological diagnosis of lung neuroendocrine tumors

Frontiers in genetics, 2022-08, Vol.13, p.944167-944167

2022

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A robust qualitative transcriptional signature for the correct pathological diagnosis of gastric cancer

Journal of translational medicine, 2019-02, Vol.17 (1), p.63-63, Article 63

2019

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Identification and characterization of genes with absolute mRNA abundances changes in tumor cells with varied transcriptome sizes

BMC genomics, 2019-02, Vol.20 (1), p.134-12, Article 134

2019

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Common DNA methylation alterations of Alzheimer's disease and aging in peripheral whole blood

Oncotarget, 2016-04, Vol.7 (15), p.19089-19098

2016

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A Qualitative Transcriptional Signature for the Risk Assessment of Precancerous Colorectal Lesions

Frontiers in genetics, 2021-01, Vol.11, p.573787-573787

2021

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Biased Influences of Low Tumor Purity on Mutation Detection in Cancer

Frontiers in molecular biosciences, 2020-12, Vol.7, p.533196-533196

2020

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Statistically controlled identification of differentially expressed genes in one-to-one cell line comparisons of the CMAP database for drug repositioning

Journal of translational medicine, 2017-09, Vol.15 (1), p.198-198, Article 198

2017

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A qualitative classification signature for post-surgery 5-fluorouracil-based adjuvant chemoradiotherapy in gastric cancer

Radiotherapy and oncology, 2021-02, Vol.155, p.65-72

2021

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Qualitative diagnostic signature for pancreatic ductal adenocarcinoma based on the within‐sample relative expression orderings

Journal of gastroenterology and hepatology, 2021-06, Vol.36 (6), p.1714-1720

2021

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Identification of population-level differentially expressed genes in one-phenotype data

Bioinformatics, 2020-08, Vol.36 (15), p.4283-4290

2020

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MetaImprint: an information repository of mammalian imprinted genes

Development (Cambridge), 2014-06, Vol.141 (12), p.2516-2523

2014

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Individualized analysis reveals CpG sites with methylation aberrations in almost all lung adenocarcinoma tissues

Journal of translational medicine, 2017-02, Vol.15 (1), p.26-26, Article 26

2017

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Differential expression analysis for individual cancer samples based on robust within-sample relative gene expression orderings across multiple profiling platforms

Oncotarget, 2016-10, Vol.7 (42), p.68909-68920

2016

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Individualized identification of disease-associated pathways with disrupted coordination of gene expression

Briefings in bioinformatics, 2016-01, Vol.17 (1), p.78-87

2016

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An individualized stemness‐related signature to predict prognosis and immunotherapy responses for gastric cancer using single‐cell and bulk tissue transcriptomes

Robust transcriptional signatures for low-input RNA samples based on relative expression orderings

Quantitative or qualitative transcriptional diagnostic signatures? A case study for colorectal cancer

lncRNA pair as candidate diagnostic signature for colorectal cancer based on the within-sample relative expression levels

Identification of the origin of brain metastases based on the relative methylation orderings of CpG sites

A qualitative transcriptional signature for the early diagnosis of colorectal cancer

Identification of Genes Universally Differentially Expressed in Gastric Cancer

Qualitative transcriptional signature for predicting pathological response of colorectal cancer to FOLFOX therapy

CpG_MPs: identification of CpG methylation patterns of genomic regions from high-throughput bisulfite sequencing data

Identification reproducible microbiota biomarkers for the diagnosis of cirrhosis and hepatocellular carcinoma

Circumvent the uncertainty in the applications of transcriptional signatures to tumor tissues sampled from different tumor sites

Hierarchical identification of a transcriptional panel for the histological diagnosis of lung neuroendocrine tumors

A robust qualitative transcriptional signature for the correct pathological diagnosis of gastric cancer

Identification and characterization of genes with absolute mRNA abundances changes in tumor cells with varied transcriptome sizes

Common DNA methylation alterations of Alzheimer's disease and aging in peripheral whole blood

A Qualitative Transcriptional Signature for the Risk Assessment of Precancerous Colorectal Lesions

Biased Influences of Low Tumor Purity on Mutation Detection in Cancer

Statistically controlled identification of differentially expressed genes in one-to-one cell line comparisons of the CMAP database for drug repositioning

A qualitative classification signature for post-surgery 5-fluorouracil-based adjuvant chemoradiotherapy in gastric cancer

Qualitative diagnostic signature for pancreatic ductal adenocarcinoma based on the within‐sample relative expression orderings

Identification of population-level differentially expressed genes in one-phenotype data

MetaImprint: an information repository of mammalian imprinted genes

Individualized analysis reveals CpG sites with methylation aberrations in almost all lung adenocarcinoma tissues

Differential expression analysis for individual cancer samples based on robust within-sample relative gene expression orderings across multiple profiling platforms

Individualized identification of disease-associated pathways with disrupted coordination of gene expression

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