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Inactivation of Arid1a in the endometrium is associated with endometrioid tumorigenesis through transcriptional reprogramming

Nature communications, 2020-06, Vol.11 (1), p.2717-14, Article 2717

2020

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Identifying intracellular signaling modules and exploring pathways associated with breast cancer recurrence

Scientific reports, 2021-01, Vol.11 (1), p.385-385, Article 385

2021

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A Bayesian approach for accurate de novo transcriptome assembly

Scientific reports, 2021-09, Vol.11 (1), p.17663-17663, Article 17663

2021

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The properties of high-dimensional data spaces: implications for exploring gene and protein expression data

Nature reviews. Cancer, 2008-01, Vol.8 (1), p.37-49

2008

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Asynchronous remodeling is a driver of failed regeneration in Duchenne muscular dystrophy

The Journal of cell biology, 2014-10, Vol.207 (1), p.139-158

2014

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CyNetSVM: A Cytoscape App for Cancer Biomarker Identification Using Network Constrained Support Vector Machines

PloS one, 2017-01, Vol.12 (1), p.e0170482-e0170482

2017

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Endoplasmic Reticulum Stress, the Unfolded Protein Response, Autophagy, and the Integrated Regulation of Breast Cancer Cell Fate

Cancer research (Chicago, Ill.), 2012-03, Vol.72 (6), p.1321-1331

2012

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BICORN: An R package for integrative inference of de novo cis-regulatory modules

Scientific reports, 2020-05, Vol.10 (1), p.7960-7960, Article 7960

2020

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ChIP-GSM: Inferring active transcription factor modules to predict functional regulatory elements

PLoS computational biology, 2021-07, Vol.17 (7), p.e1009203-e1009203

2021

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ChIP-BIT2: a software tool to detect weak binding events using a Bayesian integration approach

BMC bioinformatics, 2021-04, Vol.22 (1), p.193-193, Article 193

2021

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Mevalonate Pathway Antagonist Suppresses Formation of Serous Tubal Intraepithelial Carcinoma and Ovarian Carcinoma in Mouse Models

Clinical cancer research, 2015-10, Vol.21 (20), p.4652-4662

2015

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Identifying cancer biomarkers by network-constrained support vector machines

BMC systems biology, 2011-10, Vol.5 (164), p.161-161, Article 161

2011

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Maternal intake of high n-6 polyunsaturated fatty acid diet during pregnancy causes transgenerational increase in mammary cancer risk in mice

Breast cancer research : BCR, 2017-07, Vol.19 (1), p.77-77, Article 77

2017

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CRNET: an efficient sampling approach to infer functional regulatory networks by integrating large-scale ChIP-seq and time-course RNA-seq data

Bioinformatics, 2018-05, Vol.34 (10), p.1733-1740

2018

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Defining NOTCH3 Target Genes in Ovarian Cancer

Cancer research (Chicago, Ill.), 2012-05, Vol.72 (9), p.2294-2303

2012

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Differential dependency network analysis to identify condition-specific topological changes in biological networks

Bioinformatics, 2009-02, Vol.25 (4), p.526-532

2009

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Distinct DNA methylation profiles in ovarian serous neoplasms and their implications in ovarian carcinogenesis

American journal of obstetrics and gynecology, 2010-12, Vol.203 (6), p.584.e1-584.e22

2010

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Nuclear envelope dystrophies show a transcriptional fingerprint suggesting disruption of Rb–MyoD pathways in muscle regeneration

Brain (London, England : 1878), 2006-04, Vol.129 (4), p.996-1013

2006

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Gene network signaling in hormone responsiveness modifies apoptosis and autophagy in breast cancer cells

Journal of steroid biochemistry and molecular biology, 2009-03, Vol.114 (1), p.8-20

2009

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Robust identification of transcriptional regulatory networks using a Gibbs sampler on outlier sum statistic

Bioinformatics, 2012-08, Vol.28 (15), p.1990-1997

2012

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Motif-guided sparse decomposition of gene expression data for regulatory module identification

BMC bioinformatics, 2011-03, Vol.12 (1), p.82-82, Article 82

2011

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DDN: a caBIG® analytical tool for differential network analysis

Bioinformatics (Oxford, England), 2011-04, Vol.27 (7), p.1036-1038

2011

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Knowledge-fused differential dependency network models for detecting significant rewiring in biological networks

BMC systems biology, 2014-07, Vol.8 (1), p.87-87, Article 87

2014

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Multilevel support vector regression analysis to identify condition-specific regulatory networks

Bioinformatics, 2010-06, Vol.26 (11), p.1416-1422

2010

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PUGSVM: a caBIG™ analytical tool for multiclass gene selection and predictive classification

Bioinformatics (Oxford, England), 2011-03, Vol.27 (5), p.736-738

2011

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Inactivation of Arid1a in the endometrium is associated with endometrioid tumorigenesis through transcriptional reprogramming

Identifying intracellular signaling modules and exploring pathways associated with breast cancer recurrence

A Bayesian approach for accurate de novo transcriptome assembly

The properties of high-dimensional data spaces: implications for exploring gene and protein expression data

Asynchronous remodeling is a driver of failed regeneration in Duchenne muscular dystrophy

CyNetSVM: A Cytoscape App for Cancer Biomarker Identification Using Network Constrained Support Vector Machines

Endoplasmic Reticulum Stress, the Unfolded Protein Response, Autophagy, and the Integrated Regulation of Breast Cancer Cell Fate

BICORN: An R package for integrative inference of de novo cis-regulatory modules

ChIP-GSM: Inferring active transcription factor modules to predict functional regulatory elements

ChIP-BIT2: a software tool to detect weak binding events using a Bayesian integration approach

Mevalonate Pathway Antagonist Suppresses Formation of Serous Tubal Intraepithelial Carcinoma and Ovarian Carcinoma in Mouse Models

Identifying cancer biomarkers by network-constrained support vector machines

Maternal intake of high n-6 polyunsaturated fatty acid diet during pregnancy causes transgenerational increase in mammary cancer risk in mice

CRNET: an efficient sampling approach to infer functional regulatory networks by integrating large-scale ChIP-seq and time-course RNA-seq data

Defining NOTCH3 Target Genes in Ovarian Cancer

Differential dependency network analysis to identify condition-specific topological changes in biological networks

Distinct DNA methylation profiles in ovarian serous neoplasms and their implications in ovarian carcinogenesis

Nuclear envelope dystrophies show a transcriptional fingerprint suggesting disruption of Rb–MyoD pathways in muscle regeneration

Gene network signaling in hormone responsiveness modifies apoptosis and autophagy in breast cancer cells

Robust identification of transcriptional regulatory networks using a Gibbs sampler on outlier sum statistic

Motif-guided sparse decomposition of gene expression data for regulatory module identification

DDN: a caBIG® analytical tool for differential network analysis

Knowledge-fused differential dependency network models for detecting significant rewiring in biological networks

Multilevel support vector regression analysis to identify condition-specific regulatory networks

PUGSVM: a caBIG™ analytical tool for multiclass gene selection and predictive classification

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