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Graph regularized non-negative matrix factorization with prior knowledge consistency constraint for drug-target interactions prediction

BMC bioinformatics, 2022-12, Vol.23 (1), p.564-564, Article 564

2022

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DeepLPI: a multimodal deep learning method for predicting the interactions between lncRNAs and protein isoforms

BMC bioinformatics, 2021-01, Vol.22 (1), p.24-24, Article 24

2021

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H-PoP and H-PoPG: heuristic partitioning algorithms for single individual haplotyping of polyploids

Bioinformatics (Oxford, England), 2016-12, Vol.32 (24), p.3735-3744

2016

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LDAEXC: LncRNA–Disease Associations Prediction with Deep Autoencoder and XGBoost Classifier

Interdisciplinary sciences : computational life sciences, 2023-09, Vol.15 (3), p.439-451

2023

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Drug response prediction using graph representation learning and Laplacian feature selection

BMC bioinformatics, 2022-12, Vol.23 (Suppl 8), p.532-532, Article 532

2022

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A novel essential protein identification method based on PPI networks and gene expression data

BMC bioinformatics, 2021-05, Vol.22 (1), p.248-248, Article 248

2021

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NNDSVD-GRMF: A Graph Dual Regularization Matrix Factorization Method Using Non-Negative Initialization for Predicting Drug-Target Interactions

IEEE access, 2022, Vol.10, p.91235-91244

2022

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Predicting gene expression from histone modifications with self-attention based neural networks and transfer learning

Frontiers in genetics, 2022-12, Vol.13, p.1081842-1081842

2022

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Detecting genome-wide epistases based on the clustering of relatively frequent items

Bioinformatics, 2012-01, Vol.28 (1), p.5-12

2012

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Predict potential miRNA-disease associations based on bounded nuclear norm regularization

Frontiers in genetics, 2022-08, Vol.13, p.978975-978975

2022

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A Novel Approach Based on Bipartite Network Recommendation and KATZ Model to Predict Potential Micro-Disease Associations

Frontiers in genetics, 2019-11, Vol.10, p.1147-1147

2019

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Highly sensitive and tunable terahertz biosensor based on optical Tamm states in graphene-based Bragg reflector

Results in physics, 2019-12, Vol.15, p.102779, Article 102779

2019

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Tunable mid-infrared refractive index sensor with high angular sensitivity and ultra-high figure-of-merit based on Dirac semimetal

Results in physics, 2020-06, Vol.17, p.103035, Article 103035

2020

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Graph regularized non-negative matrix factorization with L2,1 norm regularization terms for drug-target interactions prediction

BMC bioinformatics, 2023-10, Vol.24 (1)

2023

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Graph regularized non-negative matrix factorization with $$L_{2,1}$$ norm regularization terms for drug–target interactions prediction

BMC bioinformatics, 2023-10, Vol.24 (1), Article 375

2023

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Graph regularized non-negative matrix factorization with L2,1\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$L_{2,1}$$\end{document} norm regularization terms for drug-target interactions prediction

BMC bioinformatics, 2023-10, Vol.24 (1)

2023

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DNRLCNN: A CNN Framework for Identifying MiRNA–Disease Associations Using Latent Feature Matrix Extraction with Positive Samples

Interdisciplinary sciences : computational life sciences, 2022-06, Vol.14 (2), p.607-622

2022

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DrugDoctor: enhancing drug recommendation in cold-start scenario via visit-level representation learning and training

Briefings in bioinformatics, 2024-09, Vol.25 (6)

2024

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DIMDRP: A Double Iteration Method for Drug Response Prediction

IEEE access, 2019, Vol.7, p.140224-140232

2019

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Polypharmacy side effect prediction based on semi-implicit graph variational auto-encoder

Journal of bioinformatics and computational biology, 2024-08, Vol.22 (4)

2024

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Searching High-Order SNP Combinations for Complex Diseases Based on Energy Distribution Difference

IEEE/ACM transactions on computational biology and bioinformatics, 2015-05, Vol.12 (3), p.695-704

2015

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LGH: A Fast and Accurate Algorithm for Single Individual Haplotyping Based on a Two-Locus Linkage Graph

IEEE/ACM transactions on computational biology and bioinformatics, 2015-11, Vol.12 (6), p.1255-1266

2015

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LPI-IBWA: Predicting lncRNA-protein interactions based on an improved Bi-Random walk algorithm

Methods (San Diego, Calif.), 2023-12, Vol.220, p.98-105

2023

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Graph regularized non-negative matrix factorization with \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$L_{2,1}$$\end{document}L2,1 norm regularization terms for drug–target interactions prediction

BMC bioinformatics, 2023-10, Vol.24

2023

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Graph regularized non-negative matrix factorization with [Formula: see text] norm regularization terms for drug-target interactions prediction

BMC bioinformatics, 2023-10, Vol.24 (1), p.375-375

2023

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Graph regularized non-negative matrix factorization with prior knowledge consistency constraint for drug-target interactions prediction

DeepLPI: a multimodal deep learning method for predicting the interactions between lncRNAs and protein isoforms

H-PoP and H-PoPG: heuristic partitioning algorithms for single individual haplotyping of polyploids

LDAEXC: LncRNA–Disease Associations Prediction with Deep Autoencoder and XGBoost Classifier

Drug response prediction using graph representation learning and Laplacian feature selection

A novel essential protein identification method based on PPI networks and gene expression data

NNDSVD-GRMF: A Graph Dual Regularization Matrix Factorization Method Using Non-Negative Initialization for Predicting Drug-Target Interactions

Predicting gene expression from histone modifications with self-attention based neural networks and transfer learning

Detecting genome-wide epistases based on the clustering of relatively frequent items

Predict potential miRNA-disease associations based on bounded nuclear norm regularization

A Novel Approach Based on Bipartite Network Recommendation and KATZ Model to Predict Potential Micro-Disease Associations

Highly sensitive and tunable terahertz biosensor based on optical Tamm states in graphene-based Bragg reflector

Tunable mid-infrared refractive index sensor with high angular sensitivity and ultra-high figure-of-merit based on Dirac semimetal

Graph regularized non-negative matrix factorization with L2,1 norm regularization terms for drug-target interactions prediction

Graph regularized non-negative matrix factorization with $$L_{2,1}$$ norm regularization terms for drug–target interactions prediction

DNRLCNN: A CNN Framework for Identifying MiRNA–Disease Associations Using Latent Feature Matrix Extraction with Positive Samples

DrugDoctor: enhancing drug recommendation in cold-start scenario via visit-level representation learning and training

DIMDRP: A Double Iteration Method for Drug Response Prediction

Polypharmacy side effect prediction based on semi-implicit graph variational auto-encoder

Searching High-Order SNP Combinations for Complex Diseases Based on Energy Distribution Difference

LGH: A Fast and Accurate Algorithm for Single Individual Haplotyping Based on a Two-Locus Linkage Graph

LPI-IBWA: Predicting lncRNA-protein interactions based on an improved Bi-Random walk algorithm

Graph regularized non-negative matrix factorization with [Formula: see text] norm regularization terms for drug-target interactions prediction

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