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Data-driven quantitative modeling of bacterial active nematics

Proceedings of the National Academy of Sciences - PNAS, 2019-01, Vol.116 (3), p.777-785

2019

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Prophage Hunter: an integrative hunting tool for active prophages

Nucleic acids research, 2019-07, Vol.47 (W1), p.W74

2019

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Vertical and horizontal gene transfer tradeoffs direct plasmid fitness

Molecular systems biology, 2023-02, Vol.19 (2), p.e11300-n/a

2023

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Intra-host variation and evolutionary dynamics of SARS-CoV-2 populations in COVID-19 patients

Genome medicine, 2021-02, Vol.13 (1), p.30-30, Article 30

2021

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Multiple approaches for massively parallel sequencing of SARS-CoV-2 genomes directly from clinical samples

Genome medicine, 2020-06, Vol.12 (1), p.57-15, Article 57

2020

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The Multidrug Efflux Pump MdtEF Protects against Nitrosative Damage during the Anaerobic Respiration in Escherichia coli

The Journal of biological chemistry, 2011-07, Vol.286 (30), p.26576-26584

2011

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Substantial viral diversity in bats and rodents from East Africa: insights into evolution, recombination, and cocirculation

Microbiome, 2024-04, Vol.12 (1), p.72-72, Article 72

2024

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Characterization of a novel genus of jumbo phages and their application in wastewater treatment

iScience, 2023-06, Vol.26 (6), p.106947-106947, Article 106947

2023

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Population Bottlenecks and Intra-host Evolution During Human-to-Human Transmission of SARS-CoV-2

Frontiers in medicine, 2021-02, Vol.8, p.585358-585358

2021

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Advances and challenges in cataloging the human gut virome

Cell host & microbe, 2022-07, Vol.30 (7), p.908-916

2022

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PhaGAA: an integrated web server platform for phage genome annotation and analysis

Bioinformatics (Oxford, England), 2023-03, Vol.39 (3)

2023

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DPProm: A Two-Layer Predictor for Identifying Promoters and Their Types on Phage Genome Using Deep Learning

IEEE journal of biomedical and health informatics, 2022-10, Vol.26 (10), p.5258-5266

2022

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Regulatory T cells suppress Th17 cell Ca2+ signaling in the spinal cord during murine autoimmune neuroinflammation

Proceedings of the National Academy of Sciences - PNAS, 2020-08, Vol.117 (33), p.20088-20099

2020

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Identifying Phage Sequences From Metagenomic Data Using Deep Neural Network With Word Embedding and Attention Mechanism

IEEE/ACM transactions on computational biology and bioinformatics, 2023-11, Vol.20 (6), p.3772-3785

2023

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Temporal encoding of bacterial identity and traits in growth dynamics

Proceedings of the National Academy of Sciences - PNAS, 2020-08, Vol.117 (33), p.20202-20210

2020

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Genetic signatures for lineage/sublineage classification of HPV16, 18, 52 and 58 variants

Virology (New York, N.Y.), 2021-01, Vol.553, p.62-69

2021

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Transcriptional Regulation of the Outer Membrane Porin Gene ompW Reveals its Physiological Role during the Transition from the Aerobic to the Anaerobic Lifestyle of Escherichia coli

Frontiers in microbiology, 2016, Vol.7, p.799-799

2016

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Obesity-enriched gut microbe degrades myo-inositol and promotes lipid absorption

Cell host & microbe, 2024-07

2024

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Genomic characterization of four novel bacteriophages infecting the clinical pathogen Klebsiella pneumoniae

DNA research, 2021-08, Vol.28 (4)

2021

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Environmental and genetic determinants of plasmid mobility in pathogenic Escherichia coli

Science advances, 2020-01, Vol.6 (4), p.eaax3173

2020

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Harnessing stepping-stone hosts to engineer, select, and reboot synthetic bacteriophages in one pot

Cell reports methods, 2022-05, Vol.2 (5), p.100217-100217, Article 100217

2022

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MetaPGN: a pipeline for construction and graphical visualization of annotated pangenome networks

Gigascience, 2018-10, Vol.7 (11)

2018

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Simultaneous Quantification of Seven Constituents from Zaoren Anshen Prescription and Four Endogenic Components in Rat Plasma by UHPLC-TSQ-MS/MS and the Application of the Correlation Study

Chemical and Pharmaceutical Bulletin, 2019/08/01, Vol.67(8), pp.855-863

2019

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Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China

Cell, 2020-05, Vol.181 (5), p.997-1003.e9

2020

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Millimeter to centimeter scale precision water-level monitoring using GNSS reflectometry: Application to the South-to-North Water Diversion Project, China

Remote sensing of environment, 2021-11, Vol.265, p.112645, Article 112645

2021

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Data-driven quantitative modeling of bacterial active nematics

Prophage Hunter: an integrative hunting tool for active prophages

Vertical and horizontal gene transfer tradeoffs direct plasmid fitness

Intra-host variation and evolutionary dynamics of SARS-CoV-2 populations in COVID-19 patients

Multiple approaches for massively parallel sequencing of SARS-CoV-2 genomes directly from clinical samples

The Multidrug Efflux Pump MdtEF Protects against Nitrosative Damage during the Anaerobic Respiration in Escherichia coli

Substantial viral diversity in bats and rodents from East Africa: insights into evolution, recombination, and cocirculation

Characterization of a novel genus of jumbo phages and their application in wastewater treatment

Population Bottlenecks and Intra-host Evolution During Human-to-Human Transmission of SARS-CoV-2

Advances and challenges in cataloging the human gut virome

PhaGAA: an integrated web server platform for phage genome annotation and analysis

DPProm: A Two-Layer Predictor for Identifying Promoters and Their Types on Phage Genome Using Deep Learning

Regulatory T cells suppress Th17 cell Ca2+ signaling in the spinal cord during murine autoimmune neuroinflammation

Identifying Phage Sequences From Metagenomic Data Using Deep Neural Network With Word Embedding and Attention Mechanism

Temporal encoding of bacterial identity and traits in growth dynamics

Genetic signatures for lineage/sublineage classification of HPV16, 18, 52 and 58 variants

Transcriptional Regulation of the Outer Membrane Porin Gene ompW Reveals its Physiological Role during the Transition from the Aerobic to the Anaerobic Lifestyle of Escherichia coli

Obesity-enriched gut microbe degrades myo-inositol and promotes lipid absorption

Genomic characterization of four novel bacteriophages infecting the clinical pathogen Klebsiella pneumoniae

Environmental and genetic determinants of plasmid mobility in pathogenic Escherichia coli

Harnessing stepping-stone hosts to engineer, select, and reboot synthetic bacteriophages in one pot

MetaPGN: a pipeline for construction and graphical visualization of annotated pangenome networks

Simultaneous Quantification of Seven Constituents from Zaoren Anshen Prescription and Four Endogenic Components in Rat Plasma by UHPLC-TSQ-MS/MS and the Application of the Correlation Study

Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China

Millimeter to centimeter scale precision water-level monitoring using GNSS reflectometry: Application to the South-to-North Water Diversion Project, China

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