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Investigating higher-order interactions in single-cell data with scHOT

Nature methods, 2020-08, Vol.17 (8), p.799-806

2020

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scMerge leverages factor analysis, stable expression, and pseudoreplication to merge multiple single-cell RNA-seq datasets

Proceedings of the National Academy of Sciences - PNAS, 2019-05, Vol.116 (20), p.9775-9784

2019

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Exploring the impact of nonylphenol exposure on Litopenaeus vannamei at the histological and molecular levels

Ecotoxicology and environmental safety, 2024-07, Vol.279, p.116475-116475, Article 116475

2024

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DeepAntigen: a novel method for neoantigen prioritization via 3D genome and deep sparse learning

Bioinformatics, 2020-12, Vol.36 (19), p.4894-4901

2020

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Single-cell RNA-Seq analysis reveals dynamic trajectories during mouse liver development

BMC genomics, 2017-12, Vol.18 (1), p.946-946, Article 946

2017

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Cancer type prediction based on copy number aberration and chromatin 3D structure with convolutional neural networks

BMC genomics, 2018-08, Vol.19 (Suppl 6), p.565-565, Article 565

2018

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Comparative Transcriptome Analysis of the Hepatopancreas from Macrobrachium rosenbergii Exposed to the Heavy Metal Copper

Animals (Basel), 2024-04, Vol.14 (7), p.1117

2024

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Heavy metal contamination in Shanghai agricultural soil

Heliyon, 2023-12, Vol.9 (12), p.e22824-e22824, Article e22824

2023

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Clonal evolution in liver cancer at single-cell and single-variant resolution

Journal of hematology and oncology, 2021-02, Vol.14 (1), p.22-22, Article 22

2021

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Single‐cell RNA sequencing reveals the heterogeneity and intercellular communication of hepatic stellate cells and macrophages during liver fibrosis

MedComm (2020), 2023-10, Vol.4 (5), p.e378-n/a

2023

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scCURE identifies cell types responding to immunotherapy and enables outcome prediction

Cell reports methods, 2023-11, Vol.3 (11), p.100643, Article 100643

2023

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Application of qPCR assays based on haloacids transporter gene dehp2 for discrimination of Burkholderia and Paraburkholderia

BMC microbiology, 2019-02, Vol.19 (1), p.36-36, Article 36

2019

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A novel neoantigen discovery approach based on chromatin high order conformation

BMC medical genomics, 2020-08, Vol.13 (Suppl 6), p.62-62, Article 62

2020

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Robust routes for the synthesis of N-acylated-l-homoserine lactone (AHL) quorum sensing molecules with high levels of enantiomeric purity

Tetrahedron letters, 2011-06, Vol.52 (26), p.3291-3294

2011

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Transports of acetate and haloacetate in Burkholderia species MBA4 are operated by distinct systems

BMC microbiology, 2012-11, Vol.12 (1), p.267-267

2012

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Biochemical, histological and transcriptional response of intestines in Litopenaeus vannamei under chronic zinc exposure

Chemosphere (Oxford), 2024-04, Vol.354, p.141646-141646, Article 141646

2024

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Synthesis of Medium-Ring and Iodinated Biaryl Compounds by Organocuprate Oxidation

Angewandte Chemie (International ed.), 2005-03, Vol.44 (12), p.1870-1873

2005

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Discovery of Novel PTP1B Inhibitors with Once-Weekly Therapeutic Potential for Type 2 Diabetes: Design, Synthesis, and In Vitro and In Vivo Investigations of BimBH3 Peptide Analogues

Journal of medicinal chemistry, 2023-02, Vol.66 (4), p.3030-3044

2023

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Gene doping detection in the era of genomics

Drug testing and analysis, 2024-02

2024

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Mutational signature and prognosis in adenocarcinoma of the bladder

The Journal of pathology, 2024-03, Vol.262 (3), p.334-346

2024

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Comparative Transcriptome Analysis of the Hepatopancreas from IMacrobrachium rosenbergii/I Exposed to the Heavy Metal Copper

Animals (Basel), 2024-04, Vol.14 (7)

2024

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3D genome assisted protein–protein interaction prediction

Future generation computer systems, 2022-12, Vol.137, p.87-96

2022

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Discovery of Novel PTP1B Inhibitors Derived from the BH3 Domain of Proapoptotic Bcl‑2 Proteins with Antidiabetic Potency

ACS medicinal chemistry letters, 2021-06, Vol.12 (6), p.1017-1023

2021

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Accurate tumor clonal structures require single‐cell analysis

Annals of the New York Academy of Sciences, 2022-11, Vol.1517 (1), p.213-224

2022

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Design, synthesis and antibacterial activity of a class of novel molecular engineering analogues of Tachyplesin I

Phytochemistry letters, 2022-12, Vol.52, p.54-58

2022

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Investigating higher-order interactions in single-cell data with scHOT

scMerge leverages factor analysis, stable expression, and pseudoreplication to merge multiple single-cell RNA-seq datasets

Exploring the impact of nonylphenol exposure on Litopenaeus vannamei at the histological and molecular levels

DeepAntigen: a novel method for neoantigen prioritization via 3D genome and deep sparse learning

Single-cell RNA-Seq analysis reveals dynamic trajectories during mouse liver development

Cancer type prediction based on copy number aberration and chromatin 3D structure with convolutional neural networks

Comparative Transcriptome Analysis of the Hepatopancreas from Macrobrachium rosenbergii Exposed to the Heavy Metal Copper

Heavy metal contamination in Shanghai agricultural soil

Clonal evolution in liver cancer at single-cell and single-variant resolution

Single‐cell RNA sequencing reveals the heterogeneity and intercellular communication of hepatic stellate cells and macrophages during liver fibrosis

scCURE identifies cell types responding to immunotherapy and enables outcome prediction

Application of qPCR assays based on haloacids transporter gene dehp2 for discrimination of Burkholderia and Paraburkholderia

A novel neoantigen discovery approach based on chromatin high order conformation

Robust routes for the synthesis of N-acylated-l-homoserine lactone (AHL) quorum sensing molecules with high levels of enantiomeric purity

Transports of acetate and haloacetate in Burkholderia species MBA4 are operated by distinct systems

Biochemical, histological and transcriptional response of intestines in Litopenaeus vannamei under chronic zinc exposure

Synthesis of Medium-Ring and Iodinated Biaryl Compounds by Organocuprate Oxidation

Discovery of Novel PTP1B Inhibitors with Once-Weekly Therapeutic Potential for Type 2 Diabetes: Design, Synthesis, and In Vitro and In Vivo Investigations of BimBH3 Peptide Analogues

Gene doping detection in the era of genomics

Mutational signature and prognosis in adenocarcinoma of the bladder

Comparative Transcriptome Analysis of the Hepatopancreas from IMacrobrachium rosenbergii/I Exposed to the Heavy Metal Copper

3D genome assisted protein–protein interaction prediction

Discovery of Novel PTP1B Inhibitors Derived from the BH3 Domain of Proapoptotic Bcl‑2 Proteins with Antidiabetic Potency

Accurate tumor clonal structures require single‐cell analysis

Design, synthesis and antibacterial activity of a class of novel molecular engineering analogues of Tachyplesin I

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