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Tea Plant Information Archive: a comprehensive genomics and bioinformatics platform for tea plant

Plant biotechnology journal, 2019-10, Vol.17 (10), p.1938-1953

2019

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Tea plant genomics: achievements, challenges and perspectives

Horticulture research, 2020-01, Vol.7 (1), p.1-19, Article 7

2020

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The Tea Tree Genome Provides Insights into Tea Flavor and Independent Evolution of Caffeine Biosynthesis

Molecular plant, 2017-06, Vol.10 (6), p.866-877

2017

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Autotetraploid rice methylome analysis reveals methylation variation of transposable elements and their effects on gene expression

Proceedings of the National Academy of Sciences - PNAS, 2015-12, Vol.112 (50), p.E7022-E7029

2015

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Mixed-reproductive strategies, competitive mating-type distribution and life cycle of fourteen black morel species

Scientific reports, 2017-05, Vol.7 (1), p.1493-11, Article 1493

2017

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Transcriptome analysis of the oil-rich tea plant, Camellia oleifera, reveals candidate genes related to lipid metabolism

PloS one, 2014-08, Vol.9 (8), p.e104150-e104150

2014

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The caterpillar fungus, Ophiocordyceps sinensis, genome provides insights into highland adaptation of fungal pathogenicity

Scientific reports, 2017-05, Vol.7 (1), p.1806-11, Article 1806

2017

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Transcriptome data reveal conserved patterns of fruiting body development and response to heat stress in the mushroom-forming fungus Flammulina filiformis

PloS one, 2020-10, Vol.15 (10), p.e0239890-e0239890

2020

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The Medicinal Herb Panax notoginseng Genome Provides Insights into Ginsenoside Biosynthesis and Genome Evolution

Molecular plant, 2017-06, Vol.10 (6), p.903-907

2017

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Prevalent Role of Gene Features in Determining Evolutionary Fates of Whole-Genome Duplication Duplicated Genes in Flowering Plants

Plant physiology (Bethesda), 2013-04, Vol.161 (4), p.1844-1861

2013

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Contradiction between plastid gene transcription and function due to complex posttranscriptional splicing: an exemplary study of ycf15 function and evolution in angiosperms

PloS one, 2013-03, Vol.8 (3), p.e59620-e59620

2013

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Optimized sequencing depth and de novo assembler for deeply reconstructing the transcriptome of the tea plant, an economically important plant species

BMC bioinformatics, 2019-11, Vol.20 (1), p.553-553, Article 553

2019

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Rapid diversification of five Oryza AA genomes associated with rice adaptation

Proceedings of the National Academy of Sciences - PNAS, 2014-11, Vol.111 (46), p.E4954-E4962

2014

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Genome-Wide Identification of Seven Polyamine Oxidase Genes in Camellia sinensis (L.) and Their Expression Patterns Under Various Abiotic Stresses

Frontiers in plant science, 2020-09, Vol.11, p.544933-544933

2020

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Full transcription of the chloroplast genome in photosynthetic eukaryotes

Scientific reports, 2016-07, Vol.6 (1), p.30135-30135, Article 30135

2016

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Improved hybrid de novo genome assembly and annotation of African wild rice, Oryza longistaminata, from Illumina and PacBio sequencing reads

The plant genome, 2020-03, Vol.13 (1), p.e20001-n/a

2020

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Genome-wide analysis of WRKY family of transcription factors in common bean, Phaseolus vulgaris: Chromosomal localization, structure, evolution and expression divergence

Plant gene, 2016-03, Vol.5, p.22-30

2016

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Genome Sequences Provide Insights into the Reticulate Origin and Unique Traits of Woody Bamboos

Molecular plant, 2019-10, Vol.12 (10), p.1353-1365

2019

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SMRT sequencing of the Oryza rufipogon genome reveals the genomic basis of rice adaptation

Communications biology, 2020-04, Vol.3 (1), p.167-167, Article 167

2020

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Draft genomes of two outcrossing wild rice, Oryza rufipogon and O. longistaminata, reveal genomic features associated with mating‐system evolution

Plant direct, 2020-06, Vol.4 (6), p.e00232-n/a

2020

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Genome-wide identification and comparative expression analysis reveal a rapid expansion and functional divergence of duplicated genes in the WRKY gene family of cabbage, Brassica oleracea var. capitata

Gene, 2015-02, Vol.557 (1), p.35-42

2015

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De novo transcriptome sequencing of Camellia sasanqua and the analysis of major candidate genes related to floral traits

Plant physiology and biochemistry, 2017-11, Vol.120, p.103-111

2017

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De novo transcriptome assembly of the wild relative of tea tree (Camellia taliensis) and comparative analysis with tea transcriptome identified putative genes associated with tea quality and stress response

BMC genomics, 2015-04, Vol.16 (1), p.298-298, Article 298

2015

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CandiSSR: An Efficient Pipeline used for Identifying Candidate Polymorphic SSRs Based on Multiple Assembled Sequences

Frontiers in plant science, 2016-01, Vol.6, p.1171-1171

2016

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Transcriptome Analysis Identifies Candidate Genes Related to Triacylglycerol and Pigment Biosynthesis and Photoperiodic Flowering in the Ornamental and Oil-Producing Plant, Camellia reticulata (Theaceae)

Frontiers in plant science, 2016-02, Vol.7, p.163-163

2016

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Tea Plant Information Archive: a comprehensive genomics and bioinformatics platform for tea plant

Tea plant genomics: achievements, challenges and perspectives

The Tea Tree Genome Provides Insights into Tea Flavor and Independent Evolution of Caffeine Biosynthesis

Autotetraploid rice methylome analysis reveals methylation variation of transposable elements and their effects on gene expression

Mixed-reproductive strategies, competitive mating-type distribution and life cycle of fourteen black morel species

Transcriptome analysis of the oil-rich tea plant, Camellia oleifera, reveals candidate genes related to lipid metabolism

The caterpillar fungus, Ophiocordyceps sinensis, genome provides insights into highland adaptation of fungal pathogenicity

Transcriptome data reveal conserved patterns of fruiting body development and response to heat stress in the mushroom-forming fungus Flammulina filiformis

The Medicinal Herb Panax notoginseng Genome Provides Insights into Ginsenoside Biosynthesis and Genome Evolution

Prevalent Role of Gene Features in Determining Evolutionary Fates of Whole-Genome Duplication Duplicated Genes in Flowering Plants

Contradiction between plastid gene transcription and function due to complex posttranscriptional splicing: an exemplary study of ycf15 function and evolution in angiosperms

Optimized sequencing depth and de novo assembler for deeply reconstructing the transcriptome of the tea plant, an economically important plant species

Rapid diversification of five Oryza AA genomes associated with rice adaptation

Genome-Wide Identification of Seven Polyamine Oxidase Genes in Camellia sinensis (L.) and Their Expression Patterns Under Various Abiotic Stresses

Full transcription of the chloroplast genome in photosynthetic eukaryotes

Improved hybrid de novo genome assembly and annotation of African wild rice, Oryza longistaminata, from Illumina and PacBio sequencing reads

Genome-wide analysis of WRKY family of transcription factors in common bean, Phaseolus vulgaris: Chromosomal localization, structure, evolution and expression divergence

Genome Sequences Provide Insights into the Reticulate Origin and Unique Traits of Woody Bamboos

SMRT sequencing of the Oryza rufipogon genome reveals the genomic basis of rice adaptation

Draft genomes of two outcrossing wild rice, Oryza rufipogon and O. longistaminata, reveal genomic features associated with mating‐system evolution

Genome-wide identification and comparative expression analysis reveal a rapid expansion and functional divergence of duplicated genes in the WRKY gene family of cabbage, Brassica oleracea var. capitata

De novo transcriptome sequencing of Camellia sasanqua and the analysis of major candidate genes related to floral traits

De novo transcriptome assembly of the wild relative of tea tree (Camellia taliensis) and comparative analysis with tea transcriptome identified putative genes associated with tea quality and stress response

CandiSSR: An Efficient Pipeline used for Identifying Candidate Polymorphic SSRs Based on Multiple Assembled Sequences

Transcriptome Analysis Identifies Candidate Genes Related to Triacylglycerol and Pigment Biosynthesis and Photoperiodic Flowering in the Ornamental and Oil-Producing Plant, Camellia reticulata (Theaceae)

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